 |
Job Description | P12996 | Confidence | 33.53% | Date | Thu Jan 5 11:33:15 GMT 2012 |
Rank | 433 | Aligned Residues | 99 |
% Identity | 13% | Template | c3mkcA_ |
PDB info |
PDB header:isomerase | Chain: A: PDB Molecule:racemase; |
PDBTitle: crystal structure of a putative racemase
|
Resolution | 1.77 Å |
|
 |
  |   |
74 | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | |
. | . | . | 150 | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
| . |
|  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
Query Sequence |   |
R | L | M | E | V | E | Q | V | L | E | S | A | R | K | A | K | A | A | G | S | T | R | F | C | M | G | A | A | W | K | N | P | H | E | R | D | M | P | Y | L | E | Q | M | V | Q | G | V | K | A | M | G | L | E | A | C | M | T | L | G | T | L | S | E | S | Q | A | Q | R | L | A | N | A | G | . |
L | D | Y | Y | N | H |
Query Conservation |   |
  |   |   |
|   |
|
|
|   |   |   |
|   |   |   |   |   |   |
|   |   |   |
|   |
|
|
|
|
|   |   |   |   |   |   |   |   |
|   |
|   |
|   |
|   |   |
|   |   |   |   |   |   |
|   |   |
|   |
|   |
|   |   |
|   |
|   |   |
|
|   |
|
| . |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |
|   |   |
| . | . | . | . | . |
|
|
|   |   |   |   |
|   |   |   |   |   |   |
|   |   |   | . | . | . |   |   |   |
|
|
|   |
|
|
|   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |
|   |
|   |   |
Template Sequence |   |
R | F | T | D | W | Y | E | V | A | R | L | L | N | S | I | E | D | L | E | L | Y | F | A | . |
. |
. |
. |
. |
E | A | T | L | Q | H | D | D | L | S | G | H | A | K | L | V | E | N | . |
. |
. |
T | R | S | R | I | C | G | A | E | X | S | T | T | R | F | E | A | E | E | W | I | T | K | G | K | V | H | L | L | Q | S |
Template Known Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  | T | G | G | G |
|
| S |  |  | . | . | . | . | . |  | S |
| S |
| T | T |
|  |  |  |  |  |  |  |  |  |  | . | . | . |
| S | S |
| B |  |  |
| T | T |
|
|  |  |  |  |  |  |  |  |  |  | T | T |
|
| S |  |  |
|
|
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  | . | . | . | . | . |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  | . | . | . |
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
215 | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | |
|
|
|
|
. | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | |
|
|
. | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . |
  |
  |   |
153 | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | L | D | T | S | P | E | F | Y | G | N | I | I | T | T | R | T | Y | Q | E | R | L | D | T | L | E | K | V | R | D | A | G | I | K | V | C | S | G |
Query Conservation |   |
  |   |
|
|
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|
|   |   |
|   |   |
|   |   |   |
|
|   |
|   |   |
|
Alig confidence |   |
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   | . | . | . | . | . | . | . | . | . | . |   |   |   |
|
|
|
|   |   |   |   |
|
|   |   |
|   |   |   |
|
|   |   |   |   |
|
Template Sequence |   |
D | Y | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
N | R | C | G | G | L | T | E | L | R | R | I | T | E | X | A | T | A | N | N | V | Q | V | X | P | H |
Template Known Secondary structure |   |
| T | . | . | . | . | . | . | . | . | . | . | T | T | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |
|
|
|
Template Predicted Secondary structure |   |
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
287 | . | |
|
|
|
|
|
|
|
|
|
. | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|