 |
Job Description | P12996 | Confidence | 95.99% | Date | Thu Jan 5 11:33:15 GMT 2012 |
Rank | 60 | Aligned Residues | 107 |
% Identity | 11% | Template | c3gk0H_ |
PDB info |
PDB header:transferase | Chain: H: PDB Molecule:pyridoxine 5'-phosphate synthase; |
PDBTitle: crystal structure of pyridoxal phosphate biosynthetic2 protein from burkholderia pseudomallei
|
Resolution | 2.28 Å |
|
 |
  |   |
83 | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  | . | . | . | . | . | . | . | . |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | S | A | R | K | A | K | A | A | G | S | T | R | F | C | M | G | . |
. |
. |
. |
. |
. |
. |
. |
A | A | W | K | N | P | H | E | R | D | M | P | Y | L | E | Q | M | V | Q | G | V | K | A | M | G | L | E | A | C | M | T | L | G | T | L | S | E | S | Q | A | Q | R | L | A | N | A | G | L | D | Y | Y | N | H | N | L |
Query Conservation |   |
  |   |
|   |   |   |   |   |   |
|   |   |   |
|   |
|
| . | . | . | . | . | . | . | . |
|
|
|   |   |   |   |   |   |   |   |
|   |
|   |
|   |
|   |   |
|   |   |   |   |   |   |
|   |   |
|   |
|   |
|   |   |
|   |
|   |   |
|
|   |
|
|   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |
|
|   |   |   |
|
|   |   |
|
|
|
|
|
|   |
|   |
|   |
|
|
|
|
|
|
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |   |
|
|
|
|
|
|
|
|
|
| . |   |   |   |   |
|   |   |
|   |   |   |
|
|
|   |
|
|
|
|
|
Template Sequence |   |
E | M | L | D | I | A | C | E | I | R | P | H | D | A | C | L | V | P | E | K | R | S | E | L | T | T | E | G | G | L | D | V | V | G | H | F | D | A | V | R | A | A | C | K | Q | L | A | D | A | G | V | R | V | S | L | F | I | D | P | . |
D | E | A | Q | I | R | A | A | H | E | T | G | A | P | V | I | E | L | H | T |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
| S |  |  |  |  |
|
|
| S | G | G | G | B |
| S | S |
| S | B |
| T | T | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |  |
| S | . |
|  |  |  |  |  |  |  |  |  |  |
|
| S |  |  |  |  |
|
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
| . |
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
85 | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | |
. | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . |
  |
  |   |
155 | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | T | S | P | E | F | Y | G | N | I | I | T | T | R | T | Y | Q | E | R | L | D | T | L | E | K | V | R | D | A | G | I | K | V | C | S | G |
Query Conservation |   |
|
|
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|
|   |   |
|   |   |
|   |   |   |
|
|   |
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|   |
|   |   |   |   |   |   |   |   |
|
|   |
|
|   |   |
|
|   |   |
|   |   |
|
|
|   |
|
|
|
|
Template Sequence |   |
G | R | Y | A | D | A | H | D | A | A | E | Q | Q | R | E | F | E | R | I | A | T | G | V | D | A | G | I | A | L | G | L | K | V | N | A | G |
Template Known Secondary structure |   |
 |  |  |  |  |
|
| S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |
|
Template Predicted Secondary structure |   |
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
164 | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|