Job Description P12996 Confidence 96.17% Date Thu Jan 5 11:33:15 GMT 2012 Rank 57 Aligned Residues 235 % Identity 12% Template c3chvA_ PDB info PDB header:metal binding protein Chain: A: PDB Molecule:prokaryotic domain of unknown function (duf849) with a tim PDBTitle: crystal structure of a prokaryotic domain of unknown function (duf849)2 member (spoa0042) from silicibacter pomeroyi dss-3 at 1.45 a3 resolution Resolution 1.45 Å

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		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.		.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.			.	.	.	.	.	.	.	130	.	.			.	.	.	.	.
Predicted Secondary structure																																						.																									.	.											.	.
Query SS confidence																																						.																									.	.											.	.
Query Sequence		S	S	R	Y	K	T	G	L	E	A	E	R	L	M	E	V	E	Q	V	L	E	S	A	R	K	A	K	A	A	G	S	T	R	F	C	M	.	G	A	A	W	K	N	P	H	E	R	D	M	P	Y	L	E	Q	M	V	Q	G	V	K	A	.	.	M	G	L	E	A	C	M	T	L	G	.	.	T	L	S	E	S
Query Conservation																																						.																									.	.											.	.
Alig confidence														.																								.																									.	.											.	.
Template Conservation														.
Template Sequence		S	V	P	T	K	A	D	N	P	A	V	P	.	I	T	V	S	E	Q	V	E	S	T	Q	E	A	F	E	A	G	A	A	I	A	H	C	H	V	R	N	D	D	G	T	P	S	S	D	P	D	R	F	A	R	L	T	E	G	L	H	T	H	C	P	G	X	I	V	Q	F	S	T	G	G	R	S	G	A	G	Q
Template Known Secondary structure		S	S			T	T	T		T	T			.		S															T											T	T	S																				S	T	T									T	T	T			G	G
Template Predicted Secondary structure														.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		Q	A	Q	R	L	A	N	A	G	L	D	Y	Y	N	H	N	L	D	T	.	S	P	E	F	Y	G	N	I	I	T	T	R	T	Y	Q	E	R	L	D	T	L	E	K	V	R	D	A	G	I	K	V	C	S	G	G	I	V	G	L	G	E	T	V	K	D	R	A	G	L	L	L	Q	L	A	N	L	P	T	P	P
Query Conservation																					.
Alig confidence																					.		.	.	.																																	.	.	.	.	.	.
Template Conservation																							.	.	.																																	.	.	.	.	.	.
Template Sequence		A	R	G	G	X	L	P	L	K	P	D	X	A	S	L	S	V	G	S	N	N	.	.	.	F	P	S	R	V	Y	E	N	P	P	D	L	V	D	W	L	A	A	Q	X	R	S	Y	R	V	T	P	E	I	E	A	F	.	.	.	.	.	.	D	L	S	H	I	L	R	A	I	D	X	H	G	R	G	L	L	Y
Template Known Secondary structure		G	G	G	T	T	G	G	G			S							S				.	.	.		S	S	S																				T								S	.	.	.	.	.	.	S													T	T		S
Template Predicted Secondary structure																							.	.	.																																	.	.	.	.	.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.				.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.							150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	V	P	I	N	M	L	V	K	V	K	G	T	P	L	A	D	N	D	D	V	D	A	F	D	F	I	R	T	I	A	V	A	R	I	M	M	P	T	S	Y	V	R	L	S	A	G	R	E	Q	M	N	E	Q	T	Q	A	M	C	F	M	A	G	A	N	S	I	F	Y	G	C	K	L	L	T	T	P	N	P
Query Conservation
Alig confidence															.	.	.	.	.																									.
Template Conservation															.	.	.	.	.																									.
Template Sequence		G	K	L	Y	V	Q	F	V	X	G	V	K	N	.	.	.	.	.	A	X	P	A	D	R	E	V	F	D	F	Y	V	R	X	X	R	T	R	A	P	Q	A	E	.	W	C	A	A	G	I	G	A	N	Q	L	T	V	N	E	W	A	I	A	A	G	G	H	T	R	T	G	L	E	D	N	I	R	L	D	R	Q
Template Known Secondary structure		S	S										T	T	.	.	.	.	.	S																				T	T	S		.							T	T												T	T						S	T	T	T			B	S	S	S	S
Template Predicted Secondary structure															.	.	.	.	.																									.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180						.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.		.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		297									.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.
Query Sequence		E	.	.	.	.	.	.	.	.	E	D	K	D	L	Q	L	F	R	K	L	G	L	N	P	Q
Query Conservation			.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	L	A	P	S	N	A	A	L	V	R	R	S	V	E	L	C	D	K	Y	Q	R	P	V	A
Template Known Secondary structure			B																		T	T			B
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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