Job Description P12996 Confidence 77.12% Date Thu Jan 5 11:33:15 GMT 2012 Rank 171 Aligned Residues 185 % Identity 16% Template c3bolB_ PDB info PDB header:transferase Chain: B: PDB Molecule:5-methyltetrahydrofolate s-homocysteine PDBTitle: cobalamin-dependent methionine synthase (1-566) from2 thermotoga maritima complexed with zn2+ Resolution 1.85 Å

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		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.			.	.	.	.	150	.	.
Predicted Secondary structure																																																																								.	.								.
Query SS confidence																																																																								.	.								.
Query Sequence		M	E	V	E	Q	V	L	E	S	A	R	K	A	K	A	A	G	S	T	R	F	C	M	G	A	A	W	K	N	P	H	E	R	D	M	P	Y	L	E	Q	M	V	Q	G	V	K	A	M	G	L	E	A	C	M	T	L	G	T	L	S	E	S	Q	A	Q	R	L	A	N	A	.	.	G	L	D	Y	Y	N	H	.
Query Conservation																																																																								.	.								.
Alig confidence																										.	.																								.																					.	.								.
Template Conservation																										.	.																								.
Template Sequence		G	N	E	E	I	V	I	K	E	A	K	T	Q	V	E	K	G	A	E	V	L	D	V	N	.	.	F	G	I	E	S	Q	I	D	V	R	Y	V	E	K	I	V	Q	T	L	P	Y	V	S	.	N	V	P	L	S	L	D	I	Q	N	V	D	L	T	E	R	A	L	R	A	Y	P	G	R	S	L	F	N	S	A
Template Known Secondary structure		T															T	T		S						.	.		S	S	G	G	G	S																T	.		S																				S	S
Template Predicted Secondary structure																										.	.																								.
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360			.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.		.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.					210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																																										.																		.	.	.	.
Query SS confidence																																										.																		.	.	.	.
Query Sequence		N	L	D	T	S	P	E	F	Y	G	N	I	I	T	T	R	T	Y	Q	E	R	L	D	T	L	E	K	V	R	D	A	G	I	K	V	C	S	G	G	I	.	V	G	L	G	E	T	V	K	D	R	A	G	L	L	L	Q	L	.	.	.	.	A	N	L	P	T	P	P	E	S	V	P	I	N	M	L	V	K	V
Query Conservation																																										.																		.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.																		.	.	.	.						.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.
Template Sequence		K	V	D	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	L	E	M	K	I	N	L	L	K	K	Y	G	G	T	L	I	V	L	L	M	G	K	D	V	P	K	S	F	E	E	R	K	E	Y	F	E	K	A	L	K	I	L	E	R	H	D	F	.	S	D	R	V	I	F	D	P	G	V	L	P
Template Known Secondary structure			S			.	.	.	.	.	.	.	.	.	.	.	.	.	.																					S		S	S	S				S																		T	T		.	T	T	S
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.
Template SS confidence
		414	.	.	.															.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.		.	.	.	470	.	.	.	.	.	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.								270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.
Query Sequence		K	G	T	P	L	A	D	N	D	D	V	D	A	F	D	F	I	R	T	I	A	V	A	R	I	M	M	P	T	S	Y	V	R	L	S	A	G	R	E	Q	M	N	.	.	.	.	.	.	.	E	Q	T	Q	A	M	C	F	M	A	G	A	N	S	I	F	Y
Query Conservation																																												.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.														.	.																.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.														.	.
Template Sequence		L	G	A	E	G	K	.	.	.	.	.	.	P	V	E	V	L	K	T	I	E	F	I	S	S	.	.	K	G	F	N	T	T	V	G	L	S	N	L	S	F	L	P	D	R	S	Y	Y	N	T	A	F	L	V	L	G	I	S	K	G	L	S	S	A	I	M
Template Known Secondary structure		G	G	G	T			.	.	.	.	.	.														.	.	T	T			B			B	G	G	G	T	T				S															T	T
Template Predicted Secondary structure								.	.	.	.	.	.														.	.
Template SS confidence
		479	480	.	.	.	.							.	.	.	.	.	490	.	.	.	.	.	.	.			.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions