Phyre 2 alignment of P0AFF2 with d1pv7a

Job Description P0AFF2
Confidence 2.58% Date Thu Jan 5 11:26:05 GMT 2012

Rank 78 Aligned Residues 358

% Identity 11% Template d1pv7a_

SCOP info MFS general substrate transporter MFS general substrate transporter LacY-like proton/sugar symporter

Resolution 3.60

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80								.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.
Query Sequence	R	K	K	I	R	I	R	Y	V	I	Q	L	L	V	I	E	V	L	L	A	W	F	F	L	N	S	D	V	G	L	G	F	V	K	G	F	S	E	M	F	E	K	L	L	G	F	A	N	E	G	T	N	F	V	F	G	.	.	.	.	.	.	.	S	M	N	D	Q	G	L	A	F	F	F	L	K	V	L	C	P
Query Conservation																																																									.	.	.	.	.	.	.
Alig confidence																																																									.	.	.	.	.	.	.
Template Conservation
Template Sequence	K	N	T	N	F	W	M	F	G	L	F	F	F	F	Y	F	F	I	M	G	A	Y	F	P	F	F	P	I	W	L	H	D	I	N	H	I	S	K	S	D	T	G	I	I	F	A	A	I	S	L	F	S	L	L	F	Q	P	L	F	G	L	L	S	D	K	L	G	L	R	K	Y	L	L	W	I	I	T	G	M	L
Template Known Secondary structure		S																																																					T												T	T		T
Template Predicted Secondary structure
Template SS confidence
	5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.

	98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	V	F	I	S	A	L	I	G	I	L	Q	H	I	R	V	L	P	V	I	I	R	A	I	G	F	L	L	S	K	V	N	G	M	G	K	L	E	S	F	N	A	V	S	S	L	I	L	G	Q	S	E	N	F	I	A	Y	K	D	I	L	G	K	I	S	R	N	R	M	Y	T	M	A	A	T	A	M	S	T	V
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	V	M	F	A	P	F	F	I	F	I	F	G	P	L	L	Q	Y	N	I	L	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	I	V	G	G	I	Y	L	G	F	C	F	N	A	G	A	P	A	V	E	A	F	I	E	K	V	S	R	R	S	N	F	E	F	G	R	A	R	M	F	G	C
Template Known Secondary structure		T								T							T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T	T	T	G	G	G	G	G	T	T																	S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.																	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.

	178	.	180	.	.	.	.	.	.	.	.	.			190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence	S	M	S	I	V	G	A	Y	M	T	M	L	.	.	E	P	K	Y	V	V	A	A	L	V	L	N	M	F	S	T	F	I	V	L	S	L	I	N	P	Y	R	V	D	A	S	E	E	N	I	Q	M	S	N	L	H	E	G	Q	S	F	F	E	M	L	G	E	Y	I	L	A	G	F	K	V	A	I	I	V	A	A
Query Conservation													.	.
Alig confidence													.	.
Template Conservation
Template Sequence	V	G	W	A	L	G	A	S	I	V	G	I	M	F	T	I	N	N	Q	F	V	F	W	L	G	S	G	C	A	L	I	L	A	V	L	L	F	F	A	K	T	D	A	P	S	S	A	T	V	A	N	A	V	G	A	N	H	S	A	F	S	L	K	L	A	L	E	L	F	R	Q	P	K	L	W	F	L	S	L	Y
Template Known Secondary structure																																						S	S				S		S	S	S		S	S					S														T	T	S	S
Template Predicted Secondary structure
Template SS confidence
	149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.

	256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.		.	.	.
Predicted Secondary structure																																																																													.
Query SS confidence																																																																													.
Query Sequence	M	L	I	G	F	I	A	L	I	A	A	L	N	A	L	F	A	T	V	T	G	W	F	G	Y	S	I	S	F	Q	G	I	L	G	Y	I	F	Y	P	I	A	W	V	M	G	V	P	S	S	E	A	L	Q	V	G	S	I	M	A	T	K	L	V	S	N	E	F	V	A	M	M	D	L	Q	K	I	.	A	S	T
Query Conservation																																																																													.
Alig confidence																																																																													.
Template Conservation
Template Sequence	V	I	G	V	S	C	T	Y	D	V	F	D	Q	Q	F	A	N	F	F	T	S	F	F	A	T	G	E	Q	G	T	R	V	F	G	Y	V	T	T	M	G	E	L	L	N	A	S	I	M	F	F	A	P	L	I	I	N	R	I	G	G	K	N	A	L	L	L	A	G	T	I	M	S	V	R	I	I	G	S	S	F
Template Known Secondary structure																				T	T	S	S	S																									T	T																														T
Template Predicted Secondary structure
Template SS confidence
	229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.

	335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	S	P	R	A	E	G	I	I	S	V	F	L	V	S	F	A	N	F	S	S	I	G	I	I	A	G	A	V	K	G	L	N	E	E	Q	G	N	V	V	S	R	F	G	L	K	L	V	Y	G	S	T	L	V	S	V	L	S	A	S	I	A	A	L	V
Query Conservation
Alig confidence																																								.
Template Conservation																																								.
Template Sequence	A	T	S	A	L	E	V	V	I	L	K	T	L	H	M	F	E	V	P	F	L	L	V	G	C	F	K	Y	I	T	S	Q	F	E	V	R	F	S	A	.	T	I	Y	L	V	C	F	C	F	F	K	Q	L	A	M	I	F	M	S	V	L	A	G	N	M
Template Known Secondary structure																																	S		G	G	G			.								T	T	T
Template Predicted Secondary structure																																								.
Template SS confidence
	309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.		.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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