Job Description P45759 Confidence 97.55% Date Wed Jan 25 15:20:55 GMT 2012 Rank 42 Aligned Residues 128 % Identity 19% Template c3cf1C_ PDB info PDB header:transport protein Chain: C: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: structure of p97/vcp in complex with adp/adp.alfx Resolution 4.40 Å

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		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200														.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.
Query Sequence		I	S	L	R	I	G	R	R	N	I	D	V	R	V	S	T	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	S	I	Y	G	E	R	A	V	L	R	L	L	D	K	N	S	L	Q	L	S	L	N	N	L	G	M	T	A	A	D	K	Q	D	L	E	N	L	I	Q	.	.	.	.	.	.	.	.	.	.
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	L	V	R	G	G	M	R	A	V	E	F	K	V	V	E	T	D	P	S	P	Y	C	I	V	A	P	D	T	V	I	H	C	E	G	E	P	I	K	R	E	D	E	E	E	S	L	N	E	V	G	Y	D	D	I	G	G	C	R	K	Q	L	A	Q	I	K	E	M	V	E	L	P	L	R	H	P	A	L	F	K
Template Known Secondary structure							T	T											T	T		S						T	T							S							S	S	S			T	T	S			G	G	G			S													T	T	T	T	T		T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
						240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	L	P	H	G	I	I	L	V	T	G	P	T	G	S	G	K	S	T	T	L	Y	A	I	L	S	A	L	N	T	P	G	R	N	I	L	T	V	E	D	P	V	E	Y	E	L	E	G	I	G	Q	T	Q	V	N	T	R	V	D	M	S	F	A	R	G	L	R	A	I	L	R	Q	D	P	D	V	V
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.																												.	.	.									.										.	.	.	.	.	.
Template Conservation																																	.	.	.									.										.	.	.	.	.	.
Template Sequence		A	I	G	V	K	P	P	R	G	I	L	L	Y	G	P	P	G	T	G	K	T	L	I	A	R	A	V	A	N	E	T	.	.	.	G	A	F	F	F	L	I	N	.	G	P	E	I	M	S	K	L	A	.	.	.	.	.	.	G	E	S	E	S	N	L	R	K	A	F	E	E	A	E	K	N	A	P	A	I	I
Template Known Secondary structure		T													S		T	T	S														.	.	.	T								.	T	T					S		T	.	.	.	.	.	.	T																T		S
Template Predicted Secondary structure																																	.	.	.									.										.	.	.	.	.	.
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.				.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.							280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		316	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		M	V	G	E	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	I	D	E	L
Template Known Secondary structure					T	G
Template Predicted Secondary structure
Template SS confidence
		302	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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