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Job DescriptionP45759
Confidence96.47%DateWed Jan 25 15:20:55 GMT 2012
Rank204Aligned Residues105
% Identity24%Templatec2yyzA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:sugar abc transporter, atp-binding protein; PDBTitle: crystal structure of sugar abc transporter, atp-binding protein
Resolution2.11 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   240.........250.........260.........270.........280.........290.....
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Query Sequence  LPHGIILVTGPTGSGKSTTLYAILSALNTPGRNILTVEDPVEYELEGIGQTQVNTR. . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  KDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRIS
Template Known Secondary structure 
TT

STTSSTSS

STT
TTS
GGGTT
SS



TTS
GGGSSS
S
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   27..30.........40.........50.........60.........70.........80.........90.........100......
 
   296...300.........310.........320. ........330. .......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VDMSFARGLRAILRQDPDVVMVGEIR. . . DTETAQIAVQ. . . . . ASLTGHL
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Template Sequence  KDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGIT
Template Known Secondary structure  TTTT
GGGTTS
GGGS
TT

SSTTTTS


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   107..110.........120.........130.........140.........150.........160.........170.........180......
 
   339340....
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Query Sequence  VLSTLH
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Template Sequence  SVYVTH
Template Known Secondary structure  S
Template Predicted Secondary structure 
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   187..190..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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