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Job DescriptionP45759
Confidence100.00%DateWed Jan 25 15:20:55 GMT 2012
Rank4Aligned Residues419
% Identity20%Templatec2oaq1_
PDB info PDB header:hydrolaseChain: 1: PDB Molecule:type ii secretion system protein; PDBTitle: crystal structure of the archaeal secretion atpase gspe in complex2 with phosphate
Resolution3.15 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   22.......30.........40.........50.........60..... ....70.........80.........90.........
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Query Sequence  SEGEIIYLADTPFERLLDIQRQVGQCQTMTSLSQADFEARLEAV. . FHQNTGESQQIAQDIDQSVDLLSLSEEMPANEDL
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Template Sequence  DEFRNVYYALEPTVSSEEAEVI. . . . . . . . . . . . SALYDDLKKILVLQDVSVDLEERAEVLVRAIEKTDNFYSRXLYYLF
Template Known Secondary structure  SS







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TTS


TTTT
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   50.........60.........70. ........80.........90.........100.........110.......
 
   100.........110.........120.........130.........140.........150.........160.........170.........
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Query Sequence  LNEDSAAPVIRLINAILSEAIKETASDIHIETYEKTMSIRFRIDGVLRTILQPNKKLAALLISRIKVMARLDIAEKRIPQ
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Template Sequence  RDFFGYGLIDPLXE. . . . . . . DTNVEDISCDGYNIPIFIYHQKYGNVETNIVLDQEKLDRXVLRLTQRSGKHISIANPIV
Template Known Secondary structure  TTTS
GGG.......
TT
STT


TTTS



TT


BTTB
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   127..130.........140 .........150.........160.........170.........180.........190.........
 
   180.........190.........200.........210...... ...220.........230.........240.........250........
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Query Sequence  DGRISLRIGRRNIDVRVSTLPSIYGERAVLRLLDKNS. LQLSLNNLGMTAADKQDLENLIQLPHGIILVTGPTGSGKSTT
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Template Sequence  DATLP. . . DGSRLQATFGTEVTPRGSSFTIRKFTIEPLTPIDLIEKGTVPSGVLAYLWLAIEHKFSAIVVGETASGKTTT
Template Known Secondary structure  T...TT
SSSS
TT
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TT

STTSS
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   200.... .....210.........220.........230.........240.........250.........260.........270......
 
   259260.........270.........280.........290....... ..300.........310.........320.........330...
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Query Sequence  LYAILSALNTPGRNILTVEDPVEYELEGIGQTQVNTRVD. . . . . MSFARGLRAILRQDPDVVMVGEIRDTETAQIAVQAS
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Template Sequence  LNAIXXFIPP. DAKVVSIEDTREIKLYHENWIAEVTRTGXGEGEIDXYDLLRAALRQRPDYIIVGEVRGRE. AQTLFQAX
Template Known Secondary structure  GGGS
T.TS
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SS
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SSS

B
TTSSS

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   277..280...... ...290.........300.........310.........320.........330.........340...... ...350....
 
   334.....340.........350.........360. ........370.........380.........390.........400.........410..
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Query Sequence  LTGHLVLSTLHTNSASGAVTRLRDMGVE. SFLLSSSLAGIIAQRLVRRLCPQCRQFTPVSPQQAQMFKYHQLAVTTIGTP
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Template Sequence  STGHASYSTLHAGDINQXVYRLESEPLKVPRSXLQFLDIALVQTXWVRGNTRLRR. . . . . . . . . . . . . . . . . . . . . . . TK
Template Known Secondary structure  TT

SSSTTT


GGGGGG

SSS
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   355....360.........370.........380.........390.........400......... 410.
 
   413......420.........430.........440.........450.........460 .........470 .........480...
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Query Sequence  VGCPHCHQSGYQGRMAIHEMMVVTPELRAAIHENVDEQALERLVRQQH. . KALIKNGLQK. . . . . . . VISGDTSWDEVMR
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Template Sequence  EVNEILGIDPVDKNLLVNQFVKWDPKEDKHIEVSXPKKLEKXADFLGVSVQEVYDEXLSRKRYLELXLKRGIRNYKEVTR
Template Known Secondary structure 

SSSS

TTTT
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TTS
TT


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   412.......420.........430.........440.........450.........460.........470.........480.........490.
 
   484...
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Query Sequence  VASA
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Template Sequence  YIHA
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   492...
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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