Job Description P45759 Confidence 99.85% Date Wed Jan 25 15:20:55 GMT 2012 Rank 9 Aligned Residues 156 % Identity 19% Template c1xx6B_ PDB info PDB header:transferase Chain: B: PDB Molecule:thymidine kinase; PDBTitle: x-ray structure of clostridium acetobutylicum thymidine kinase with2 adp. northeast structural genomics target car26. Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		239	240	.	.	.	.	.		.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		Q	L	P	H	G	I	I	.	L	V	T	G	P	T	G	S	G	K	S	T	T	L	Y	A	I	L	S	A	L	N	T	P	G	R	N	I	L	T	V	E	D	P	V	E	Y	E	L	E	G	I	G	Q	T	Q	V	N	T	R	V	D	M	S	F	A	R	G	L	R	A	I	L	R	Q	D	P	D	V	V	M	V
Query Conservation									.
Alig confidence									.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	K	D	H	G	W	V	E	V	I	V	G	P	X	Y	S	G	K	S	E	E	L	I	R	R	I	R	R	A	K	I	A	K	Q	K	I	Q	V	F	K	P	E	A	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	I	K	N	S	R	E	I	L	K	Y	F	E	E	D	T	E	V	I	A	I
Template Known Secondary structure			T	T										S	T	T	S	S															T	T												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S	S	T								T	T		S
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.																.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
		318	.	320	.			.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340		.	.	.				.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure						.	.																				.				.	.	.
Query SS confidence						.	.																				.				.	.	.
Query Sequence		G	E	I	R	.	.	D	T	E	T	A	Q	I	A	V	Q	A	S	L	T	G	H	L	V	L	.	S	T	L	.	.	.	H	T	N	S	A	S	G	A	V	T	R	L	R	D	M	G	V	E	S	F	L	L	S	S	S	L	A	G	I	I	A	Q	R	L	V	R	R	L	C	P	Q	C	R	Q	F	T	P	V
Query Conservation						.	.																				.				.	.	.
Alig confidence						.	.																				.				.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	E	V	Q	F	F	D	D	E	I	V	E	I	V	N	K	I	A	E	S	G	R	R	V	I	C	A	G	L	D	X	D	F	R	G	K	P	F	G	P	I	P	E	L	X	A	I	A	E	F	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	K	I	Q	A	I	C	V	V	C	G	N	P	A	T	R
Template Known Secondary structure			S	G	G	G	S		T												T	T									S	B		T	T	S		B		T	T									S		.	.	.	.	.	.	.	.	.	.	.	.	.									T	T	T	S	S
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.														.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P	Q	Q	A	Q	M	F	K	Y	H	Q	L	A	V	T	T	I	G	T	P	V	G	C	P	H	C	H	Q	S	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	Q	R	L	I	N	G	K	P	A	F	Y	D	D	P	V	X	E	S	Y	E	A	R	C	R	K	C	H	V	V	P
Template Known Secondary structure							T	T					T	T												T	T	T
Template Predicted Secondary structure
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions