Job Description P45759 Confidence 97.14% Date Wed Jan 25 15:20:55 GMT 2012 Rank 104 Aligned Residues 119 % Identity 19% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.											.	.	.	.	.	.	.					300	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.								.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.	.	.								.	.	.	.
Query Sequence		Q	L	P	H	G	I	I	L	V	T	G	P	T	G	S	G	K	S	T	T	L	Y	A	I	L	S	A	L	N	T	P	G	R	N	I	L	T	V	E	D	P	V	E	Y	E	L	E	G	I	G	Q	T	Q	V	.	.	.	.	.	.	.	.	.	.	N	T	R	V	D	M	S	.	.	.	.	F	A	R	G	L
Query Conservation																																																								.	.	.	.	.	.	.	.	.	.								.	.	.	.
Alig confidence																																						.																		.	.	.	.	.	.	.	.	.	.								.	.	.	.
Template Conservation																																						.
Template Sequence		T	K	L	P	F	I	I	M	L	V	G	V	Q	G	S	G	K	T	T	T	A	G	K	L	A	Y	F	Y	K	K	R	G	Y	K	V	G	.	L	V	A	A	D	V	Y	R	P	A	A	Y	D	Q	L	L	Q	L	G	N	Q	I	G	V	Q	V	Y	G	E	P	N	N	Q	N	P	I	E	I	A	K	K	G	V
Template Known Secondary structure		S	S	S	S								S	S	S	S	S	S	T	T	T										T	T	S					.	B						S	S	S		S											T	T							S	S				T	T
Template Predicted Secondary structure																																						.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.					.	.	.	.	.	.	.	.					330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.									.	.	.	.
Query SS confidence																			.	.	.	.									.	.	.	.
Query Sequence		R	A	I	L	R	Q	D	P	D	V	V	M	V	G	E	I	R	.	.	.	.	D	T	E	T	A	Q	I	A	.	.	.	.	V	Q	A	S	L	T	G	H	L	V	L	S	T	L	H	T	N	S	A	S	G	A	V	T	R	L	R	D	M
Query Conservation																			.	.	.	.									.	.	.	.
Alig confidence																			.	.	.	.									.	.	.	.
Template Conservation
Template Sequence		D	I	F	V	K	N	K	M	D	I	I	I	V	D	T	A	G	R	H	G	Y	G	E	E	T	K	L	L	E	E	M	K	E	M	Y	D	V	L	K	P	D	D	V	I	L	V	I	D	A	S	I	G	Q	K	A	Y	D	L	A	S	R	F
Template Known Secondary structure							T	T		S									S			S	S	T																		S								T	T	T	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions