Job Description P42596 Confidence 95.73% Date Thu Jan 5 12:01:41 GMT 2012 Rank 328 Aligned Residues 64 % Identity 25% Template c3trkA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:nonstructural polyprotein; PDBTitle: structure of the chikungunya virus nsp2 protease Resolution 2.40 Å

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		297	.	.	300	.	.	.	.	.	.	.						.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.		.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.						.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure													.	.	.	.	.																			.																								.	.	.	.	.
Query SS confidence													.	.	.	.	.																			.																								.	.	.	.	.
Query Sequence		F	R	F	N	A	V	L	C	N	P	P	.	.	.	.	.	F	H	Q	Q	H	A	L	T	D	N	V	A	W	E	M	F	H	H	.	A	R	R	C	L	K	I	N	G	E	L	Y	I	V	A	N	R	H	L	D	Y	F	H	.	.	.	.	.	K	L	K	K	I	F	G	N	C	T	T	I
Query Conservation													.	.	.	.	.																			.																								.	.	.	.	.
Alig confidence													.	.	.	.	.																			.																								.	.	.	.	.
Template Conservation
Template Sequence		G	R	Y	D	L	V	V	I	N	I	H	T	P	F	R	I	H	H	Y	Q	Q	C	V	D	H	A	X	K	L	Q	X	L	G	G	D	S	L	R	L	L	K	P	G	G	S	L	L	I	R	A	Y	G	Y	A	D	R	T	S	E	R	V	I	C	V	L	G	R	K	F	R	S	S	R	A	L
Template Known Secondary structure																	S	S																			G	G	G	G																S												T	T
Template Predicted Secondary structure
Template SS confidence
		1212	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions