Job Description P42596 Confidence 37.26% Date Thu Jan 5 12:01:41 GMT 2012 Rank 472 Aligned Residues 138 % Identity 15% Template c3k1qA_ PDB info PDB header:virus Chain: A: PDB Molecule:vp1, the protein that forms the mrna-capping PDBTitle: backbone model of an aquareovirus virion by cryo-electron2 microscopy and bioinformatics Resolution 4.50 Å

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		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.			.	.
Predicted Secondary structure																																																																														.	.
Query SS confidence																																																																														.	.
Query Sequence		A	R	F	F	M	Q	H	L	P	E	N	L	E	G	E	I	V	D	L	G	C	G	N	G	V	I	G	L	T	L	L	D	K	N	P	Q	A	K	V	V	F	V	D	E	S	P	M	A	V	A	S	S	R	L	N	V	E	T	N	M	P	E	A	L	D	R	C	E	F	M	I	N	N	A	L	S	.	.	G	V
Query Conservation																																																																														.	.
Alig confidence																																.	.													.	.	.	.	.	.	.	.																									.	.
Template Conservation																																.	.													.	.	.	.	.	.	.	.
Template Sequence		N	S	F	I	S	E	Q	T	R	N	P	N	L	A	H	L	L	D	L	G	T	G	P	E	C	R	I	L	S	L	.	.	I	P	P	T	L	Q	V	T	M	S	D	S	.	.	.	.	.	.	.	.	R	P	C	A	E	L	M	A	S	F	D	P	A	L	T	A	Y	V	Q	G	D	Y	S	T	A	A	F	W
Template Known Secondary structure							T	S	T	T	T	T									S			T	T		T					.	.	S		T	T									.	.	.	.	.	.	.	.	S				S	S	S	S	S			T	T	T						S		T	T	S	S	S		G
Template Predicted Secondary structure																																.	.													.	.	.	.	.	.	.	.
Template SS confidence
		816	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.			.	.	.	.	850	.	.	.	.	.	.	.									.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330			.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.
Query SS confidence																																						.	.
Query Sequence		E	P	F	R	F	N	A	V	L	C	N	P	P	F	H	Q	Q	H	A	L	T	D	N	V	A	W	E	M	F	H	H	A	R	R	C	L	.	.	K	I	N	G	E	L	Y	I	V	A	N	R	H	L	D	Y	F	H	K	L	K	K	I	F	G	N	C	T	T	I	A	T	N	N	K	F	V
Query Conservation																																						.	.
Alig confidence																																						.	.																						.	.	.
Template Conservation																																																													.	.	.
Template Sequence		N	G	I	R	C	D	S	A	T	A	I	F	T	I	G	A	A	A	A	A	A	G	T	D	L	I	A	F	V	Q	Q	L	I	P	R	I	V	A	A	G	G	T	R	M	W	L	Q	L	N	T	P	L	Y	E	V	S	S	L	P	.	.	.	D	L	I	E	I	D	L	R	D	H	V	Y	R
Template Known Secondary structure		G	G				S						S										T																T	T	T									B			S	S	S				B	T	.	.	.	T	T					T	T	T	T
Template Predicted Secondary structure																																																													.	.	.
Template SS confidence
		886	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.				.	.	.	.	.	950	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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