Job Description P42596 Confidence 100.00% Date Thu Jan 5 12:01:41 GMT 2012 Rank 2 Aligned Residues 352 % Identity 21% Template c3dmgA_ PDB info PDB header:transferase Chain: A: PDB Molecule:probable ribosomal rna small subunit methyltransferase; PDBTitle: t. thermophilus 16s rrna n2 g1207 methyltransferase (rsmc) in complex2 with adohcy Resolution 1.55 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	H	L	D	N	G	F	R	S	L	T	L	Q	R	F	P	A	T	D	D	V	N	P	L	Q	A	W	E	A	A	D	E	Y	L	L	Q	Q	L	D	D	T	E	I	R	G	P	V	L	I	L	N	D	A	F	G	A	L	S	C	A	L	A	E	H	K	P	Y	S	I	G	D	S	Y	I	S	E	L	A	T
Query Conservation
Alig confidence											.	.													.	.	.	.	.															.	.																															.	.	.
Template Conservation											.	.													.	.	.	.	.															.	.																															.	.	.
Template Sequence		L	T	P	L	P	H	P	G	G	.	.	R	L	F	I	K	P	G	A	R	G	Y	R	.	.	.	.	.	D	P	V	H	D	L	L	Q	K	T	V	E	P	F	.	.	G	E	R	A	L	D	L	N	P	G	V	G	W	G	S	L	P	L	E	G	R	M	A	V	E	R	L	E	T	S	.	.	.	R	A	A
Template Known Secondary structure								T	T		.	.						T	T		S	S	S	S	.	.	.	.	.									T	T					.	.	S	S					S	S		T	T	S	T	T	T	G	G	G	B	T	T	B								B	.	.	.
Template Predicted Secondary structure											.	.													.	.	.	.	.															.	.																															.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.			20	.	.	.	.	.	.	.	.	.	30	.						.	.	.	.	.	.	.	.	40	.	.	.	.	.			.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.				.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.			.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.
Query SS confidence																																					.	.
Query Sequence		R	E	N	L	R	L	N	G	I	D	E	S	S	V	K	F	L	D	S	T	A	D	Y	P	Q	Q	P	G	V	V	L	I	K	V	P	.	.	K	T	L	A	L	L	E	Q	Q	L	R	A	L	R	K	V	V	T	S	D	T	R	I	I	A	G	A	K	A	R	D	I	H	T	S	T	L	E	L	F	E	K	V
Query Conservation																																					.	.
Alig confidence																.	.	.																			.	.
Template Conservation																.	.	.
Template Sequence		F	R	C	L	T	A	S	G	L	Q	A	R	L	A	.	.	.	L	P	W	E	A	A	A	G	A	Y	D	L	V	V	L	A	L	P	A	G	R	G	T	A	Y	V	Q	A	S	L	V	A	A	A	R	A	L	R	M	G	G	R	L	Y	L	A	G	D	K	N	K	G	F	E	R	Y	F	K	E	A	R	A	L
Template Known Secondary structure								T	T							.	.	.		G	G	G	S		T	T											G	G	G																												G	G	G	T
Template Predicted Secondary structure																.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.				.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190			.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.							.	.	230
Predicted Secondary structure																																		.	.																																						.	.	.	.	.	.
Query SS confidence																																		.	.																																						.	.	.	.	.	.
Query Sequence		L	G	P	T	T	T	T	L	A	W	K	K	A	R	L	I	N	C	T	F	N	E	P	Q	L	A	D	A	P	Q	T	V	.	.	S	W	K	L	E	G	T	D	W	T	I	H	N	H	A	N	V	F	S	R	T	G	L	D	I	G	A	R	F	F	M	Q	H	L	P	E	N	.	.	.	.	.	.	L	E	G
Query Conservation																																		.	.																																						.	.	.	.	.	.
Alig confidence																																		.	.																																						.	.	.	.	.	.
Template Conservation
Template Sequence		L	G	Y	G	V	V	V	R	R	E	G	P	Y	R	V	A	L	L	E	K	E	K	E	A	P	P	L	P	S	L	W	R	A	F	S	A	R	I	L	G	A	E	Y	T	F	H	H	L	P	G	V	F	S	A	G	K	V	D	P	A	S	L	L	L	L	E	A	L	Q	E	R	L	G	P	E	G	V	R	G	R
Template Known Secondary structure			S									T	T										S																	T	T									T	T		T	T	T	T	S																		T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.		.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																		.
Query SS confidence																																																																		.
Query Sequence		E	I	V	D	L	G	C	G	N	G	V	I	G	L	T	L	L	D	K	N	P	Q	A	K	V	V	F	V	D	E	S	P	M	A	V	A	S	S	R	L	N	V	E	T	N	M	P	E	A	L	D	R	C	E	F	M	I	N	N	A	L	S	G	V	.	E	P	F	R	F	N	A	V	L	C	N	P	P	F	H
Query Conservation																																																																		.
Alig confidence																							.	.																											.	.	.	.												.
Template Conservation																							.	.																											.	.	.	.
Template Sequence		Q	V	L	D	L	G	A	G	Y	G	A	L	T	L	P	L	A	R	M	G	A	.	.	E	V	V	G	V	E	D	D	L	A	S	V	L	S	L	Q	K	G	L	E	A	N	A	L	K	A	.	.	.	.	Q	A	L	H	S	D	V	D	E	A	L	T	E	E	A	R	F	D	I	I	V	T	N	P	P	F	H
Template Known Secondary structure							T		T	T	S	T	T							T	T		.	.							S	B														T	T				.	.	.	.						S	T	T	T	T	S		T	T
Template Predicted Secondary structure																							.	.																											.	.	.	.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.			.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.					.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	H	A	L	T	D	N	V	A	W	E	M	F	H	H	A	R	R	C	L	K	I	N	G	E	L	Y	I	V	A	N	R	H	L	D	Y	F	H	K	L	K	K	I	F	G	N	C	T	T	I	A	T	N	N	K	F	V	V	L	K	A	V	K	L
Query Conservation
Alig confidence																																																						.
Template Conservation																																																						.
Template Sequence		V	G	G	A	V	I	L	D	V	A	Q	A	F	V	N	V	A	A	A	R	L	R	P	G	G	V	F	F	L	V	S	N	P	F	L	K	Y	E	P	L	L	E	E	K	F	G	A	F	Q	T	L	K	.	V	A	E	Y	K	V	L	F	A	E	K	R
Template Known Secondary structure		T	T		S	S																												T	T	S											S							.		S	S	S
Template Predicted Secondary structure																																																						.
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.		.	.	.	.	.	.	.	.	370	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions