Job Description P42596 Confidence 100.00% Date Thu Jan 5 12:01:41 GMT 2012 Rank 1 Aligned Residues 334 % Identity 26% Template c2pjdA_ PDB info PDB header:transferase Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase c; PDBTitle: crystal structure of 16s rrna methyltransferase rsmc Resolution 2.10 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	W	E	A	A	D	E	Y	L	L	Q	Q	L	D	D	T	E	I	R	G	P	V	L	I	L	N	D	A	F	G	A	L	S	C	A	L	A	E	H	K	P	Y	S	I	G	D	S	Y	I	S	E	L	A	T	R	E	N	L	R	L	N	G	I	D	E	S	S	V	K	F	L	D	S	T	A	D	Y	P	Q	Q
Query Conservation
Alig confidence																			.																																												.	.	.	.	.
Template Conservation																			.																																												.	.	.	.	.
Template Sequence		A	F	T	P	A	S	E	V	L	L	R	H	S	D	D	F	E	.	Q	S	R	I	L	F	A	G	D	L	Q	D	D	L	P	A	R	L	D	T	A	A	S	R	A	H	T	Q	Q	F	H	H	W	Q	V	L	S	R	Q	X	G	D	N	.	.	.	.	.	A	R	F	S	L	V	A	T	A	D	D	V	A	D
Template Known Secondary structure				S								T	T					T	.	T											S	S					S			S							S	B												G	G	G	.	.	.	.	.					S	S							T	T
Template Predicted Secondary structure																			.																																												.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.						.	.	.	.	.	.	.	70	.	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	V	V	L	I	K	V	P	K	T	L	A	L	L	E	Q	Q	L	R	A	L	R	K	V	V	T	S	D	T	R	I	I	A	G	A	K	A	R	D	I	H	T	S	T	L	E	L	F	E	K	V	L	G	P	T	T	T	T	L	A	W	K	K	A	R	L	I	N	C	T	F	N	E	P	Q	L	A	D	A
Query Conservation
Alig confidence																																																								.
Template Conservation																																																								.
Template Sequence		C	D	T	L	I	Y	Y	W	P	K	N	K	P	E	A	Q	F	Q	L	X	N	L	L	S	L	L	P	V	G	T	D	I	F	V	V	G	E	N	R	S	G	V	R	S	A	E	Q	X	L	A	D	Y	A	P	.	L	N	K	V	D	S	A	R	R	C	G	L	Y	F	G	R	L	E	K	Q	P	V	F	D	A
Template Known Secondary structure			S								S	S													T	T	S		T	T									G	G	G	T	G	G	G						T	T	T	S		.								T	T										S						G
Template Predicted Secondary structure																																																								.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130		.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Q	T	V	S	W	K	L	E	G	T	D	W	T	I	H	N	H	A	N	V	F	S	R	T	G	L	D	I	G	A	R	F	F	M	Q	H	L	P	E	N	L	E	G	E	I	V	D	L	G	C	G	N	G	V	I	G	L	T	L	L	D	K	N	P	Q	A	K	V	V	F	V	D	E	S	P	M	A	V	A
Query Conservation
Alig confidence						.
Template Conservation						.
Template Sequence		E	K	F	W	.	G	E	Y	S	V	D	G	L	T	V	K	T	L	P	G	V	F	S	R	D	G	L	D	V	G	S	Q	L	L	L	S	T	L	T	P	H	T	K	G	K	V	L	D	V	G	C	G	A	G	V	L	S	V	A	F	A	R	H	S	P	K	I	R	L	T	L	C	D	V	S	A	P	A	V	E
Template Known Secondary structure		G	G	G		.						T	T							T	T		T	T	S	S	S												S		T	T			S	B			B	T	T		T	T	S											T	T		B						S	B
Template Predicted Secondary structure						.
Template SS confidence
		156	.	.	.		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	R	L	N	V	E	T	N	M	P	E	A	L	D	R	C	E	F	M	I	N	N	A	L	S	G	V	E	P	F	R	F	N	A	V	L	C	N	P	P	F	H	Q	Q	H	A	L	T	D	N	V	A	W	E	M	F	H	H	A	R	R	C	L	K	I	N	G	E	L	Y	I	V	A	N	R	H	L	D	Y
Query Conservation
Alig confidence													.	.	.	.															.
Template Conservation													.	.	.	.															.
Template Sequence		A	S	R	A	T	L	A	A	N	G	V	.	.	.	.	E	G	E	V	F	A	S	N	V	F	S	E	V	K	.	G	R	F	D	X	I	I	S	N	P	P	F	H	D	G	M	Q	T	S	L	D	A	A	Q	T	L	I	R	G	A	V	R	H	L	N	S	G	G	E	L	R	I	V	A	N	A	F	L	P	Y
Template Known Secondary structure										T	T		.	.	.	.								S	T	T	T	T			.	S													S	S	S															G	G	G													T	T	S	S
Template Predicted Secondary structure													.	.	.	.															.
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.					.	.	.	.	250	.	.	.	.	.	.	.	.	.		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	H	K	L	K	K	I	F	G	N	C	T	T	I	A	T	N	N	K	F	V	V	L	K	A	V	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	D	V	L	D	E	T	F	G	F	H	E	V	I	A	Q	T	G	R	F	K	V	Y	R	A	I	X
Template Known Secondary structure										S									S	S
Template Predicted Secondary structure
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions