Job Description P42596 Confidence 37.56% Date Thu Jan 5 12:01:41 GMT 2012 Rank 471 Aligned Residues 94 % Identity 17% Template c2nvuB_ PDB info PDB header:protein turnover, ligase Chain: B: PDB Molecule:maltose binding protein/nedd8-activating enzyme PDBTitle: structure of appbp1-uba3~nedd8-nedd8-mgatp-ubc12(c111a), a2 trapped ubiquitin-like protein activation complex Resolution 2.80 Å

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		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.				250	.	.	.	.	.	.	.	.	.																				260	.
Predicted Secondary structure																																																.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	A	N	V	F	S	R	T	G	L	D	I	G	A	R	F	F	M	Q	H	L	P	E	N	L	E	G	E	I	V	D	L	G	C	G	N	G	V	I	G	L	T	L	L	D	K	.	.	.	N	P	Q	A	K	V	V	F	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	S
Query Conservation																																																.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.											.	.									.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.											.	.
Template Sequence		R	S	G	P	F	T	H	P	D	F	E	P	S	T	E	S	L	Q	F	L	L	D	T	.	.	.	C	K	V	L	V	I	G	A	G	G	.	.	L	G	C	E	L	L	K	N	L	A	L	S	G	F	R	Q	I	H	V	I	D	M	D	T	I	D	V	S	N	L	N	R	Q	F	L	F	R	P	K	D	I	G
Template Known Secondary structure		S			T	T	S		T	T					S									T	.	.	.									S	S	.	.											T	T	T											B			G	G	G	G	G	T		T	T			G	G	G	T	T
Template Predicted Secondary structure																									.	.	.											.	.
Template SS confidence
		2026	.	.	.	2030	.	.	.	.	.	.	.	.	.	2040	.	.	.	.	.	.	.	.				.	2050	.	.	.	.	.	.	.	.			.	2060	.	.	.	.	.	.	.	.	.	2070	.	.	.	.	.	.	.	.	.	2080	.	.	.	.	.	.	.	.	.	2090	.	.	.	.	.	.	.	.	.	2100
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.			.	.	.	300	.	.	.	.
Predicted Secondary structure																																					.	.
Query SS confidence																																					.	.
Query Sequence		P	M	A	V	A	S	S	R	L	N	V	E	T	N	M	P	E	A	L	D	R	C	E	F	M	I	N	N	A	L	S	G	V	E	P	.	.	F	R	F	N	A	V	L	C
Query Conservation																																					.	.
Alig confidence																			.	.																	.	.
Template Conservation																			.	.
Template Sequence		R	P	K	A	E	V	A	A	E	F	L	N	D	R	V	P	N	.	.	C	N	V	V	P	H	F	N	K	I	Q	D	F	N	D	T	F	Y	R	Q	F	H	I	I	V	C
Template Known Secondary structure		S	B													S	T	T	.	.								S		G	G	G	S							T		S
Template Predicted Secondary structure																			.	.
Template SS confidence
		2101	.	.	.	.	.	.	.	.	2110	.	.	.	.	.	.	.			.	.	2120	.	.	.	.	.	.	.	.	.	2130	.	.	.	.	.	.	.	.	.	2140	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions