Job Description P42596 Confidence 98.22% Date Thu Jan 5 12:01:41 GMT 2012 Rank 297 Aligned Residues 132 % Identity 13% Template c1i4wA_ PDB info PDB header:transcription Chain: A: PDB Molecule:mitochondrial replication protein mtf1; PDBTitle: the crystal structure of the transcription factor sc-mttfb2 offers intriguing insights into mitochondrial transcription Resolution 2.60 Å

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		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Query SS confidence																																																																										.	.	.	.	.	.	.	.
Query Sequence		F	M	Q	H	L	P	E	N	L	E	G	E	I	V	D	L	G	C	G	N	G	V	I	G	L	T	L	L	D	K	N	P	Q	A	K	V	V	F	V	D	E	S	P	M	A	V	A	S	S	R	L	N	V	E	T	N	M	P	E	A	L	D	R	C	E	F	M	I	N	N	A	L	.	.	.	.	.	.	.	.
Query Conservation																																																																										.	.	.	.	.	.	.	.
Alig confidence																																																									.	.	.	.	.	.												.	.	.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.
Template Sequence		L	T	K	T	Y	K	H	P	E	E	L	K	V	L	D	L	Y	P	G	V	G	I	Q	S	A	I	F	Y	N	K	Y	C	P	R	Q	Y	S	L	L	E	K	R	S	S	L	Y	K	F	L	N	A	K	F	E	G	.	.	.	.	.	.	S	P	L	Q	I	L	K	R	D	P	Y	D	W	S	T	Y	S	N	L
Template Known Secondary structure		G	G	G	T				T	T	T							S		T	T														S																			T	T	T	.	.	.	.	.	.	S	S						S		T	T
Template Predicted Secondary structure																																																									.	.	.	.	.	.
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.							.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
														292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.			330	.	.	.	.	.	.	.	.	.	340																.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																																							.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.																																							.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	S	G	V	E	P	F	R	F	N	A	V	L	C	N	P	P	F	H	Q	Q	H	A	L	T	D	N	V	A	W	E	M	F	H	H	A	R	R	C	.	.	L	K	I	N	G	E	L	Y	I	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	R
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.																																							.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.																	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.
Template Sequence		I	D	E	E	R	I	F	V	P	E	V	Q	S	S	D	H	I	N	D	K	F	L	T	V	A	N	V	T	G	E	.	.	.	.	G	S	E	G	L	I	M	Q	W	L	S	C	I	G	N	K	N	W	L	Y	R	F	G	K	V	K	M	L	L	W	M	P	S	T	T	A	R	K	L	L	A	R	P	G	M	H
Template Known Secondary structure		T	T	T	T		S	S							T	T	S													S	T	.	.	.	.	T															T		G	G	G	G	G	S																				T	T	S	T
Template Predicted Secondary structure																																.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.					.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	L	D	Y	F	H	K	L	K	K	I	F	G	N	C	T	T	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	R	S	K	C	S	V	V	R	E	A	F	T	D	T	K	L	I	A
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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