Job Description P75867 Confidence 100.00% Date Thu Jan 5 12:15:15 GMT 2012 Rank 2 Aligned Residues 455 % Identity 19% Template c3m6aC_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:atp-dependent protease la 1; PDBTitle: crystal structure of bacillus subtilis lon c-terminal domain Resolution 3.40 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.		.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence		I	F	A	Q	P	H	L	I	D	E	N	D	P	L	F	S	D	T	Q	P	R	L	Q	F	A	L	E	Q	L	L	H	T	R	A	S	S	S	F	M	L	A	K	A	P	E	E	S	E	Y	L	N	L	I	A	N	A	A	R	.	T	L	Q	S	D	A	G	Q	L	V	G	G	H	Y	E	V	S	G	H	S	I
Query Conservation																																																												.
Alig confidence																																								.	.	.	.																	.
Template Conservation																																								.	.	.	.
Template Sequence		E	V	Q	T	L	T	E	K	I	E	E	A	G	M	P	D	H	V	K	E	T	A	L	K	E	L	N	R	Y	E	K	I	P	S	S	S	A	E	.	.	.	.	S	S	V	I	R	N	Y	I	D	W	L	V	A	L	P	W	T	D	E	T	D	D	K	L	D	L	K	E	A	G	R	L	L	D	E	E	H	H
Template Known Secondary structure		T	T	T								S	S	S															S	S				S	S	S		T	T	.	.	.	.	T	T												S		S	S									T	T	T	T									S
Template Predicted Secondary structure																																								.	.	.	.
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.					.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	R	H	A	V	S	A	D	D	N	F	A	T	L	T	Q	V	V	A	A	D	W	V	E	A	E	Q	L	F	G	C	L	R	Q	F	N	G	D	I	T	L	Q	P	G	L	V	H	Q	A	N	G	G	I	L	I	I	S	L	R	T	L	L	A	Q	P	L	L	W	M	R	L	K	N	I	V	N	R	E	R
Query Conservation
Alig confidence																				.	.	.	.	.	.	.															.	.	.	.																																				.	.
Template Conservation																				.	.	.	.	.	.	.															.	.	.	.																																				.	.
Template Sequence		G	L	E	K	V	K	E	R	I	L	E	Y	L	A	V	Q	K	L	.	.	.	.	.	.	.	T	K	S	L	K	G	P	I	L	C	L	A	G	P	.	.	.	.	P	G	V	G	K	T	S	L	A	K	S	I	A	K	S	L	G	R	K	F	V	R	I	S	L	G	G	R	I	I	Q	G	M	K	K	.	.
Template Known Secondary structure		S																		.	.	.	.	.	.	.	S	S	S			S							S	S	.	.	.	.	S	S	S	S													T																		T	.	.
Template Predicted Secondary structure																				.	.	.	.	.	.	.															.	.	.	.																																				.	.
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.								.	.	.	.	.	.	.	.	350	.	.	.	.	.					.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		F	D	W	V	A	F	D	E	S	R	P	L	P	V	S	V	P	S	M	P	L	K	L	K	V	I	L	V	G	E	R	E	S	L	A	.	D	F	Q	E	M	E	P	E	L	S	E	Q	A	I	Y	S	E	F	E	D	T	L	Q	I	V	D	A	E	S	V	T	Q	W	C	R	W	V	T	F	T	A	R	H	N
Query Conservation																																					.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.																											.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	K	L	N	P	V	F	L	L	D	E	I	D	K	M	S	A	M	L	E	V	L	D	P	E	Q	N	S	S	F	S	D	H	Y	I	E	E	T	F	D	L	S	K	.	.	.	.	.	.	.	V	L	F	I	A	T	A	N	N	L	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T		S	S	S								S	S	S					G	G	G	T		T	T	T	T	T	B				S	S	S					B		S	S	.	.	.	.	.	.	.								S	S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.
Template SS confidence
																				411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.								.	.	.	.	.	460	.	.	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.			.	330	.	.	.	.	.	.
Predicted Secondary structure																																																																								.	.
Query SS confidence																																																																								.	.
Query Sequence		H	L	P	A	P	G	A	D	A	W	P	I	L	I	R	E	A	A	R	Y	T	G	E	Q	E	T	L	P	L	S	P	Q	W	I	L	R	Q	C	K	E	V	A	S	L	C	D	G	D	T	F	S	G	E	Q	L	N	L	M	L	Q	Q	R	E	W	R	E	G	F	L	A	.	.	E	R	M	Q	D	E	I	L
Query Conservation																																																																								.	.
Alig confidence															.	.																																															.									.	.
Template Conservation															.	.																																															.
Template Sequence		T	I	P	G	P	L	R	D	R	M	E	I	I	.	.	N	I	A	G	Y	T	E	I	E	K	L	E	I	V	K	D	H	L	L	P	K	Q	I	K	E	H	G	L	K	K	S	N	L	Q	L	R	D	Q	A	I	L	D	I	I	R	Y	.	Y	T	R	E	A	G	V	R	S	L	E	R	Q	L	A	A	I	C
Template Known Secondary structure		T	S												.	.																	T									T				G	G	G															.					S	S	S
Template Predicted Secondary structure															.	.																																															.
Template SS confidence
		475	.	.	.	.	480	.	.	.	.	.	.	.			.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.		.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.
		337	.	.	340																														.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	E	Q	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	I	E	T	E	G	E	R	I	G	Q	I	N	A	L	S	V	I	E	F	P	G	H	P	R	A	F	G	E	P	S	R	I	S	C	V	V	H	I	G	D	G	E	F	T	D	I
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.
Template Sequence		R	K	A	A	K	A	I	V	A	E	E	R	K	R	I	T	V	T	E	K	N	L	Q	D	F	I	G	K	R	I	F	R	Y	G	Q	A	E	T	E	D	Q	V	G	V	V	T	G	L	A	Y	T	T	V	G	.	.	.	.	.	.	G	D	T	L	S	I	E	V	S	L	S	P	G	K	G	K	L	I	L	T
Template Known Secondary structure										T	T			S						T	T	T	T						S			S			S	T	T	S				B	S	S									T	T		.	.	.	.	.	.												S	S		S
Template Predicted Secondary structure																																																								.	.	.	.	.	.
Template SS confidence
		552	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.							.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.						420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
Predicted Secondary structure																																		.	.	.	.	.
Query SS confidence																																		.	.	.	.	.
Query Sequence		E	R	K	A	E	L	G	G	N	I	H	A	K	G	M	M	I	M	Q	A	F	L	M	S	E	L	Q	L	E	Q	Q	I	.	.	.	.	.	P	F	S	A	S	L	T	F	E	Q	S	Y	S	E	V	D	G	D	S	A	S	M	A	E	L	C	A	L	I	S	A	L	A	D	V	P	V	N	Q	S	I	A	I
Query Conservation																																		.	.	.	.	.
Alig confidence					.	.	.	.																										.	.	.	.	.
Template Conservation					.	.	.	.
Template Sequence		G	K	L	.	.	.	.	G	D	V	M	R	E	S	A	Q	A	A	F	S	Y	V	R	S	K	T	E	E	L	G	I	E	P	D	F	H	E	K	Y	D	I	H	I	H	V	P	E	G	A	V	P	K	D	G	P	A	A	G	I	T	M	A	T	A	L	V	S	A	L	T	G	R	A	V	S	R	E	V	G	M
Template Known Secondary structure			S		.	.	.	.																T	S	S		G	G	G	S	S		S	S		T	T	T									T	T	S		G	G	G	G	G	G	G													S	S			B		T	T
Template Predicted Secondary structure					.	.	.	.
Template SS confidence
		626	.	.					.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.
		463	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	S	V	D	Q	F	G	R	A	Q	P	V	G	G	L	N	E	K	I	E	G	F	F	A	I	C	Q	Q	R	E	L	T	G	K	Q	G	V	I	I	P	T	A	N	V	R	H	L	S	L	H	S	E	L	V	K	A	V	E	E	G	K	F	T	I	W	A	V	D	D	V	T	D	A	L	P	L	L	L
Query Conservation
Alig confidence																												.	.	.	.	.	.	.																.	.	.											.
Template Conservation																												.	.	.	.	.	.	.																.	.	.											.
Template Sequence		T	G	E	I	T	L	R	G	R	V	L	P	I	G	G	L	K	E	K	A	L	G	A	H	R	A	.	.	.	.	.	.	.	G	L	T	T	I	I	A	P	K	D	N	E	K	D	I	.	.	.	E	D	I	P	E	S	V	R	E	G	.	L	T	F	I	L	A	S	H	L	D	E	V	L	E	H	A	L
Template Known Secondary structure							T	T		B					S												T	.	.	.	.	.	.	.	T		S	B					G	G	G	G	G	G	T	.	.	.	T	T	S						T	S	.		B					S	B									B
Template Predicted Secondary structure																												.	.	.	.	.	.	.																.	.	.											.
Template SS confidence
		702	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.								.	.	730	.	.	.	.	.	.	.	.	.	740	.	.				.	.	.	.	.	.	.	750	.	.		.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.