Job Description P75867 Confidence 100.00% Date Thu Jan 5 12:15:15 GMT 2012 Rank 1 Aligned Residues 437 % Identity 22% Template c3k1jA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent protease lon; PDBTitle: crystal structure of lon protease from thermococcus onnurineus na1 Resolution 2.00 Å

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		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.						.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.
Query SS confidence																																				.	.	.	.	.
Query Sequence		L	R	H	A	V	S	A	D	D	N	F	A	T	L	T	Q	V	V	A	A	D	W	V	E	A	E	Q	L	F	G	C	L	R	Q	.	.	.	.	.	F	N	G	D	I	T	L	Q	P	G	L	V	H	Q	A	N	G	G	I	L	I	I	S	L	R	T	L	L	A	Q	P	L	L	W	M	R	L	K	N	I	V
Query Conservation																																				.	.	.	.	.
Alig confidence																																				.	.	.	.	.																													.
Template Conservation																																																																					.
Template Sequence		L	V	P	K	L	L	V	D	N	C	G	R	T	K	A	P	F	I	D	A	T	G	A	H	A	G	A	L	L	G	D	V	R	H	D	P	F	L	G	T	P	A	H	E	R	V	E	P	G	M	I	H	R	A	H	K	G	V	L	F	I	D	E	I	A	T	L	.	S	L	K	M	Q	Q	S	L	L	T	A	M
Template Known Secondary structure											T	T		S	S							T	T																				G	G	G	G									T	T	T	S					T	T	G	G	G	S	.
Template Predicted Secondary structure																																																																					.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.		.	.	.	250	.	.	.	.	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.		.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure															.																																						.
Query SS confidence															.																																						.
Query Sequence		N	R	E	R	F	D	W	V	A	F	D	E	S	.	R	P	L	P	V	S	V	P	S	M	P	L	K	L	K	V	I	L	V	G	E	R	E	S	L	A	D	F	Q	E	M	E	P	E	L	S	E	.	Q	A	I	Y	S	E	F	E	D	T	L	Q	I	V	D	A	E	S	V	T	Q	W	C	R	W	V	T	F
Query Conservation															.																																						.
Alig confidence															.																																						.															.
Template Conservation																																																																				.
Template Sequence		Q	E	K	K	F	P	I	T	G	Q	S	E	M	S	S	G	A	M	V	R	T	E	P	V	P	C	D	F	V	L	V	A	A	G	N	L	D	T	V	D	K	M	H	P	A	L	R	S	R	I	R	G	Y	G	Y	E	V	Y	M	R	T	T	M	P	D	T	.	I	E	N	R	R	K	L	V	Q	F	V	A	Q
Template Known Secondary structure				S					B		S		T	T	S	G	G	G	G		B		S																				S												S							S						.
Template Predicted Secondary structure																																																																				.
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.		.	330	.	.	.	.	.	.	.	.	.	340	.
		254	.	.	.	.	.		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.				.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.																																													.	.	.
Query SS confidence								.																																													.	.	.
Query Sequence		T	A	R	H	N	H	.	L	P	A	P	G	A	D	A	W	P	I	L	I	R	E	A	A	R	Y	T	G	E	Q	E	T	L	P	L	S	P	Q	W	I	L	R	Q	C	K	E	V	A	S	L	C	.	.	.	D	G	D	T	F	S	G	E	Q	L	N	L	M	L	Q	Q	R	E	W	R	E	G	F	L	A	E
Query Conservation								.																																													.	.	.
Alig confidence								.																																													.	.	.
Template Conservation
Template Sequence		E	V	K	R	D	G	K	I	P	H	F	T	K	E	A	V	E	E	I	V	R	E	A	Q	K	R	A	G	R	K	G	H	L	T	L	R	L	R	D	L	G	G	I	V	R	A	A	G	D	I	A	V	K	K	G	K	K	Y	V	E	R	E	D	V	I	E	A	V	K	M	A	K	P	L	E	K	Q	L	A	D
Template Known Secondary structure								S	S			B	B														T	T		S	T	T																							T	T		S	S	B												T
Template Predicted Secondary structure
Template SS confidence
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	M	Q	D	E	I	L	Q	E	Q	I	L	I	E	T	E	G	E	R	I	G	Q	I	N	A	L	S	V	I	E	F	P	G	H	P	R	A	F	G	E	P	S	R	I	S	C	V	V	H	I	G	D	G	E	F	T	D	I	E	R	K	A	E	L	G	G	N	I	H	A	K	G	M	M	I	M	Q	A	F	L
Query Conservation
Alig confidence													.																					.	.	.	.	.
Template Conservation													.																					.	.	.	.	.
Template Sequence		W	Y	I	E	R	K	K	E	Y	Q	V	.	I	K	T	E	G	S	E	I	G	R	V	N	G	L	A	V	I	G	E	Q	.	.	.	.	.	S	G	I	V	L	P	I	E	A	V	V	A	P	A	A	S	K	E	E	G	K	I	I	V	T	G	K	L	G	E	I	A	K	E	A	V	Q	N	V	S	A	I	I
Template Known Secondary structure									T	T			.				S	S			T	T									T	T	T	.	.	.	.	.															S	S	S	S								S		B
Template Predicted Secondary structure													.																					.	.	.	.	.
Template SS confidence
		422	.	.	.	.	.	.	.	430	.	.		.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.						.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	E	L	Q	L	E	Q	Q	I	P	F	S	A	S	L	T	F	E	Q	S	Y	S	E	V	D	G	D	S	A	S	M	A	E	L	C	A	L	I	S	A	L	A	D	V	P	V	N	Q	S	I	A	I	T	G	S	V	D	Q	F	G	R	A	Q	P	V	G	G	L	N	E	K	I	E	G	F	F	A	I	C
Query Conservation
Alig confidence									.																																																																								.
Template Conservation									.																																																																								.
Template Sequence		K	R	Y	K	G	E	D	.	I	S	R	Y	D	I	H	V	Q	F	L	Q	T	Y	E	G	V	E	G	D	A	A	S	I	S	V	A	T	A	V	I	S	A	L	E	G	I	P	I	R	Q	D	V	A	M	T	G	S	L	S	V	R	G	E	V	L	P	I	G	G	A	T	P	A	I	E	A	A	I	E	A	.
Template Known Secondary structure							G	G	.	G	G	G								T	T		T	T		B		S	S	T	T														T					T	T									T	T	S	B					S													.
Template Predicted Secondary structure									.																																																																								.
Template SS confidence
		496	.	.	.	500	.	.		.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.
		490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	R	E	L	T	G	K	Q	G	V	I	I	P	T	A	N	V	R	H	L	S	L	H	S	E	L	V	K	A	V	E	E	G	K	F	T	I	W	A	V	D	D	V	T	D	A	L	P	L	L	L	N	L	V	W	D	G	E	G	Q	T	T	L	M	Q	T	I	Q	E	R	I
Query Conservation
Alig confidence		.	.	.	.	.	.																									.	.	.	.	.																				.	.	.
Template Conservation		.	.	.	.	.	.																									.	.	.	.	.																				.	.	.
Template Sequence		.	.	.	.	.	.	G	I	K	M	V	I	I	P	K	S	N	E	K	D	V	F	L	S	K	D	K	A	E	K	.	.	.	.	.	I	Q	I	F	P	V	E	T	I	D	E	V	L	E	I	A	L	E	E	.	.	.	S	E	K	K	R	E	L	L	R	R	I	R	E	T	L
Template Known Secondary structure		.	.	.	.	.	.	T								G	G	G	G	G	G									T	T	.	.	.	.	.							S	B									B			.	.	.	S												T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.																									.	.	.	.	.																				.	.	.
Template SS confidence
								574	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.						.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.				.	.	.	620	.	.	.	.	.	.	.	.	.	630	.