Job Description P75867 Confidence 99.17% Date Thu Jan 5 12:15:15 GMT 2012 Rank 8 Aligned Residues 249 % Identity 14% Template c3dzdA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4 in the inactive2 state Resolution 2.40 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.			.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure																															.	.
Query SS confidence																															.	.
Query Sequence		F	S	D	T	Q	P	R	L	Q	F	A	L	E	Q	L	L	H	T	R	A	S	S	S	F	M	L	A	K	A	.	.	P	E	E	S	E	Y	L	N	L	I	A	N	A	A	R	T	L	Q	S	D	A	G	Q	L	V	G	G	H	Y	E	V	S	G	H	S	I	R	L	R	H	A	V	S	A	D	D	N	F	A
Query Conservation																															.	.
Alig confidence																															.	.																.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.
Template Sequence		V	E	R	F	L	L	T	I	K	H	A	F	E	E	Y	S	K	K	A	P	P	Q	E	E	I	E	F	V	G	E	H	P	K	I	L	E	I	K	R	L	I	P	K	I	A	K	.	.	.	.	.	.	S	K	A	P	V	L	I	T	G	E	S	G	T	G	K	E	I	V	A	R	L	I	H	R	Y	S	G	R
Template Known Secondary structure																	S															S															T	.	.	.	.	.	.	S		S								T	T	S	S
Template Predicted Secondary structure																																																.	.	.	.	.	.
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.							.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		113	.	.	.	.	.	.	120	.							.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.													.
Query SS confidence											.	.	.	.	.	.													.
Query Sequence		T	L	T	Q	V	V	A	A	D	.	.	.	.	.	.	W	V	E	A	E	Q	L	F	G	C	L	R	.	Q	F	N	G	D	I	T	L	Q	P	G	L	V	H	Q	A	N	G	G	I	L	I	I	S	L	R	T	L	L	A	Q	P	L	L	W	M	R	L	K	N	I	V	N	R	E	R	F	D	W	V	A	F
Query Conservation											.	.	.	.	.	.													.
Alig confidence				.							.	.	.	.	.	.													.																														.																						.
Template Conservation				.																																																							.																						.
Template Sequence		K	G	.	A	F	V	D	L	N	C	A	S	I	P	Q	E	L	A	E	S	E	L	F	G	H	E	K	G	A	F	T	G	A	L	T	R	K	K	G	K	L	E	L	A	D	Q	G	T	L	F	L	D	E	V	G	E	L	.	D	Q	R	V	Q	A	K	L	L	R	V	L	E	T	G	S	F	T	R	L	G	.
Template Known Secondary structure			S	.							S	S	S	S		T	T	T										S		S	S	S	S												T	T	T	S						T	G	G	G	S	.															S					B	T	.
Template Predicted Secondary structure				.																																																							.																						.
Template SS confidence
		180	.		.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.		.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.			220	.	.	.	.	.		.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure																																				.	.							.
Query SS confidence																																				.	.							.
Query Sequence		D	E	S	R	P	L	P	V	S	V	P	S	M	P	L	K	L	K	V	I	L	V	G	E	R	E	S	L	A	D	F	Q	E	M	.	.	E	P	E	L	S	E	.	Q	A	I	Y	S	E	F	E	D	T	L	Q	I	V	D	A	E	S	V	T	Q	W	C	R	W	V	T	F	T	A	R	H	N	H	L	P	A
Query Conservation																																				.	.							.
Alig confidence		.	.	.	.	.	.	.	.																											.	.							.
Template Conservation		.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	G	N	Q	K	I	E	V	D	I	R	V	I	S	A	T	N	K	N	L	E	E	E	I	K	K	G	N	F	R	E	D	L	Y	Y	R	L	S	V	F	Q	I	Y	L	P	P	L	R	E	R	G	K	D	V	I	L	L	A	E	Y	F	L	K	K	F	A	K	E	Y	K	K	N	C
Template Known Secondary structure		.	.	.	.	.	.	.	.																S	S								T	T	S	S									T	S								G	G	G	S	T	T																	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.
Template SS confidence
										257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
				263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	P	G	A	D	A	W	P	I	L	I	R	E	A	A	R	Y	T	G	E	Q	E	T	L	P	L	S	P	Q	W	I	L	R	Q	C	K	E	V	A	S	L	C	D	G	D	T	F	S
Query Conservation		.	.
Alig confidence		.	.														.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.
Template Sequence		F	E	L	S	E	E	T	K	E	Y	L	X	K	Q	E	.	.	.	.	.	.	.	.	.	W	K	G	N	V	R	E	L	K	N	L	I	E	R	A	V	I	L	C	E	G	E	V	I	K
Template Known Secondary structure				B										T			.	.	.	.	.	.	.	.	.		T	T															T			S	S	B
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.										.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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