Job Description P75867 Confidence 38.03% Date Thu Jan 5 12:15:15 GMT 2012 Rank 55 Aligned Residues 132 % Identity 12% Template c1sxjE_ PDB info PDB header:replication Chain: E: PDB Molecule:activator 1 40 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		F	N	G	D	I	T	L	Q	P	G	L	V	H	Q	A	N	G	G	I	L	I	I	S	L	R	T	L	L	A	Q	P	L	L	W	M	.	R	L	K	N	I	V	N	R	E	R	F	D	W	V	A	F	D	E	S	R	P	L	P	V	S	V	P	S	M	P	L	K	L	K	V	I	L	V	G	E	R	E	S	L
Query Conservation																																					.
Alig confidence						.	.	.	.																												.																							.	.	.	.
Template Conservation						.	.	.	.																																																			.	.	.	.
Template Sequence		L	Y	G	P	.	.	.	.	N	G	T	G	K	K	T	R	C	M	A	L	L	E	S	I	F	G	P	G	V	Y	R	N	V	V	S	S	P	Y	H	L	E	I	T	P	S	N	D	R	I	V	I	Q	E	L	L	K	E	V	.	.	.	.	A	Q	M	E	Q	R	Y	K	C	V	I	I	N	E	A	N	S	L
Template Known Secondary structure					S	.	.	.	.	T	T	S	S							T						S		T	T									S	S																					.	.	.	.	T	T	T	T											T	T	S	S
Template Predicted Secondary structure						.	.	.	.																																																			.	.	.	.
Template SS confidence
		41	.	.	.					.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.					.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
																											214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	F	Q	E	M	E	P	E	L	S	E	Q	A	I	Y	S	E	F	E	D	T	L	Q	I	V	D	A	E	S	V	T	Q	W	C	R	W	V	T	F	T	A	R	H	N	H	L	P	A	P	G	A	D	A	W
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.
Template Sequence		T	K	D	A	Q	A	A	L	R	R	T	M	E	K	Y	S	K	N	I	R	L	I	M	V	C	D	S	M	S	P	I	I	A	P	I	K	S	Q	C	L	L	I	R	C	P	A	P	S	D	S	E	I	.	.	.	.	.	.	.	S	T	I	L	S	D	V	V	T	N	E	R	I	Q	L	E	T	K	D	I	L
Template Known Secondary structure																S	T	T	T								S		S		S	S						T	T	S														.	.	.	.	.	.	.												T						S
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.								.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		269	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	I	L	I	R	E	A	A	R	Y	T	G	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	R	I	A	Q	A	S	N	G	N	L	R	V
Template Known Secondary structure									T	T
Template Predicted Secondary structure
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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