Job Description P75867 Confidence 96.83% Date Thu Jan 5 12:15:15 GMT 2012 Rank 14 Aligned Residues 207 % Identity 15% Template c1ojlF_ PDB info PDB header:response regulator Chain: F: PDB Molecule:transcriptional regulatory protein zrar; PDBTitle: crystal structure of a sigma54-activator suggests the2 mechanism for the conformational switch necessary for3 sigma54 binding Resolution 3.0 Å

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		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.					.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.
Query SS confidence																																																				.	.	.	.
Query Sequence		Y	E	V	S	G	H	S	I	R	L	R	H	A	V	S	A	D	D	N	F	A	T	L	T	Q	V	V	A	A	D	W	V	E	A	E	Q	L	F	G	C	L	R	Q	F	N	G	D	I	T	L	.	.	.	.	Q	P	G	L	V	H	Q	A	N	G	G	I	L	I	I	S	L	R	T	L	L	A	Q	P	L	L
Query Conservation																																																				.	.	.	.
Alig confidence																																																				.	.	.	.																						.
Template Conservation																																																																													.
Template Sequence		H	G	D	S	G	T	G	K	E	L	V	A	R	A	L	H	A	C	S	A	R	S	D	R	P	L	V	T	L	N	C	A	A	L	N	E	S	L	L	E	S	E	L	F	G	H	E	K	G	A	F	T	K	R	R	E	G	R	F	V	E	A	D	G	G	T	L	F	L	D	E	I	G	D	I	.	S	P	L	M
Template Known Secondary structure					T	T	S	S												S	S		S	S	S								T	T											T				S	S	S								T	T	G	G	G	T	T	S							G	G	G		.
Template Predicted Secondary structure																																																																													.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.		.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.			220	.	.	.	.	.		.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure																																																						.	.							.
Query SS confidence																																																						.	.							.
Query Sequence		W	M	R	L	K	N	I	V	N	R	E	R	F	D	W	V	A	F	D	E	S	R	P	L	P	V	S	V	P	S	M	P	L	K	L	K	V	I	L	V	G	E	R	E	S	L	A	D	F	Q	E	M	.	.	E	P	E	L	S	E	.	Q	A	I	Y	S	E	F	E	D	T	L	Q	I	V	D	A	E	S	V
Query Conservation																																																						.	.							.
Alig confidence																			.	.	.	.	.	.	.	.	.																											.	.							.
Template Conservation																			.	.	.	.	.	.	.	.	.
Template Sequence		Q	V	R	L	L	R	A	I	Q	E	R	E	V	Q	R	V	G	.	.	.	.	.	.	.	.	.	S	N	Q	T	I	S	V	D	V	R	L	I	A	A	T	H	R	D	L	A	E	E	V	S	A	G	R	F	R	Q	D	L	Y	Y	R	L	N	V	V	A	I	E	M	P	S	L	R	Q	R	R	E	D	I	P
Template Known Secondary structure											S	S					S	S	.	.	.	.	.	.	.	.	.	S															S	S									T	S	S										S								G	G	G	G	G	G	G
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.										.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.			260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.
Query SS confidence																	.	.
Query Sequence		T	Q	W	C	R	W	V	T	F	T	A	R	H	N	H	.	.	L	P	A	P	G	A	D	A	W	P	I	L	I	R	E	A	A	R	Y	T	G	E	Q	E	T	L	P	L	S	P	Q	W	I	L	R	Q	C	K	E	V	A	S	L	C	D	G	D	T	F	S	G	E	Q	L	N	L	M	L
Query Conservation																	.	.
Alig confidence																	.	.																	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.
Template Sequence		L	L	A	D	H	F	L	R	R	F	A	E	R	N	R	K	V	V	K	G	F	T	P	Q	A	M	D	L	L	I	H	Y	D	.	.	.	.	.	.	.	.	.	W	P	G	N	I	R	E	L	E	N	A	I	E	R	A	V	V	L	L	T	G	E	Y	I	S	E	R	E	L	P	L	A	I
Template Known Secondary structure															T	T						B													.	.	.	.	.	.	.	.	.		T	T																		S	S	S	B		G	G	G	S		G	G	G
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.										.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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