Return to main results Retrieve Phyre Job Id

Job DescriptionP75867
Confidence99.30%DateThu Jan 5 12:15:15 GMT 2012
Rank7Aligned Residues206
% Identity13%Templatec1ny5A_
PDB info PDB header:transcriptionChain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   93......100.........110.........120. ........130... ......140.........150.........160.....
Predicted Secondary structure 
















......





.














Query SS confidence 




























. . . . . .











.































Query Sequence  EVSGHSIRLRHAVSADDNFATLTQVVAAD. . . . . . WVEAEQLFGCLR. QFNGDITLQPGLVHQANGGILIISLRTLLAQP
Query Conservation   
               
     


 
 ......      


 
 .  

      
    
 

 
      

   
Alig confidence 




























......











.




























.

Template Conservation 

 



   
  

  
      

 
 
           


              
    
  


 
  
  
.  
Template Sequence  GESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGEL. SL
Template Known Secondary structure 
STTSSSTTTTS
TTTS

B
TTSSTT

S
B

TTTSSGGG
.
Template Predicted Secondary structure 








































.
Template SS confidence 















































































   167..170.........180.........190.........200.........210.........220.........230.........240... ..
 
   166...170.........180.........190.........200.........210........ .220..... ....230.........240..
Predicted Secondary structure 























..

.










Query SS confidence 




















































. .






.
















Query Sequence  LLWMRLKNIVNRERFDWVAFDESRPLPVSVPSMPLKLKVILVGERESLADFQE. . MEPELSE. QAIYSEFEDTLQIVDAE
Query Conservation   
   


 

  
 
                      





      
  .. 

    .     
        
  
Alig confidence 


















.........
























..






.
















Template Conservation    
  
   
         .........         


  
   
  
     
   
   
    
 






  
Template Sequence  EAQAKLLRVIESGKFYRLG. . . . . . . . . GRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKED
Template Known Secondary structure  S

BT.........

S



SS
TTSS
TT


GGG
Template Predicted Secondary structure 




.........

























Template SS confidence 















































































   246...250.........260.... .....270.........280.........290.........300.........310......
 
   243......250.........260.. .......270.........280.........290.........300.........310.......
Predicted Secondary structure 




..

















Query SS confidence 



















. .






















































Query Sequence  SVTQWCRWVTFTARHNHLPA. . PGADAWPILIREAARYTGEQETLPLSPQWILRQCKEVASLCDGDTFSGEQLNLML
Query Conservation          
        
  ..        

    
              
   
 

        
    
   
Alig confidence 



















..












.........
































Template Conservation 
  
    
              
  
   
    .........




 

   
           
    
    
Template Sequence  IIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYP. . . . . . . . . WYGNVRELKNVIERAVLFSEGKFIDRGELSCLV
Template Known Secondary structure  TT




S
.........
TT

SS

Template Predicted Secondary structure 










.........













Template SS confidence 












































































   317..320.........330.........340.........350. ........360.........370.........380....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions