Job Description P07395 Confidence 100.00% Date Thu Jan 5 11:00:19 GMT 2012 Rank 1 Aligned Residues 795 % Identity 100% Template c3pcoD_ PDB info PDB header:ligase Chain: D: PDB Molecule:phenylalanyl-trna synthetase, beta chain; PDBTitle: crystal structure of e. coli phenylalanine-trna synthetase complexed2 with phenylalanine and amp Resolution 3.02 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	F	S	E	L	W	L	R	E	W	V	N	P	A	I	D	S	D	A	L	A	N	Q	I	T	M	A	G	L	E	V	D	G	V	E	P	V	A	G	S	F	H	G	V	V	V	G	E	V	V	E	C	A	Q	H	P	N	A	D	K	L	R	V	T	K	V	N	V	G	G	D	R	L	L	D	I	V	C	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	K	F	S	E	L	W	L	R	E	W	V	N	P	A	I	D	S	D	A	L	A	N	Q	I	T	M	A	G	L	E	V	D	G	V	E	P	V	A	G	S	F	H	G	V	V	V	G	E	V	V	E	C	A	Q	H	P	N	A	D	K	L	R	V	T	K	V	N	V	G	G	D	R	L	L	D	I	V	C	G
Template Known Secondary structure																S	S											T	T	T	S								S	S				S	S														S	S	T	T									S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	N	C	R	Q	G	L	R	V	A	V	A	T	I	G	A	V	L	P	G	D	F	K	I	K	A	A	K	L	R	G	E	P	S	E	G	M	L	C	S	F	S	E	L	G	I	S	D	D	H	S	G	I	I	E	L	P	A	D	A	P	I	G	T	D	I	R	E	Y	L	K	L	D	D	N	T	I	E	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	P	N	C	R	Q	G	L	R	V	A	V	A	T	I	G	A	V	L	P	G	D	F	K	I	K	A	A	K	L	R	G	E	P	S	E	G	M	L	C	S	F	S	E	L	G	I	S	D	D	H	S	G	I	I	E	L	P	A	D	A	P	I	G	T	D	I	R	E	Y	L	K	L	D	D	N	T	I	E	I
Template Known Secondary structure		S	T	T			T	T								T	T				T	T	T								S	S	S	S						B			T	G	G	G	T	S		S		S	S	S	S		B			S				T	T	S	B					T	T		S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	T	P	N	R	A	D	C	L	G	I	I	G	V	A	R	D	V	A	V	L	N	Q	L	P	L	V	Q	P	E	I	V	P	V	G	A	T	I	D	D	T	L	P	I	T	V	E	A	P	E	A	C	P	R	Y	L	G	R	V	V	K	G	I	N	V	K	A	P	T	P	L	W	M	K	E	K	L	R	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	V	T	P	N	R	A	D	C	L	G	I	I	G	V	A	R	D	V	A	V	L	N	Q	L	P	L	V	Q	P	E	I	V	P	V	G	A	T	I	D	D	T	L	P	I	T	V	E	A	P	E	A	C	P	R	Y	L	G	R	V	V	K	G	I	N	V	K	A	P	T	P	L	W	M	K	E	K	L	R	R
Template Known Secondary structure					S	S		G	G	G	S	S												T	T															S									S		G	G	G		S								B	S			T	T													T
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		C	G	I	R	S	I	D	A	V	V	D	V	T	N	Y	V	L	L	E	L	G	Q	P	M	H	A	F	D	K	D	R	I	E	G	G	I	V	V	R	M	A	K	E	G	E	T	L	V	L	L	D	G	T	E	A	K	L	N	A	D	T	L	V	I	A	D	H	N	K	A	L	A	M	G	G	I	F	G	G	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	G	I	R	S	I	D	A	V	V	D	V	T	N	Y	V	L	L	E	L	G	Q	P	M	H	A	F	D	K	D	R	I	E	G	G	I	V	V	R	M	A	K	E	G	E	T	L	V	L	L	D	G	T	E	A	K	L	N	A	D	T	L	V	I	A	D	H	N	K	A	L	A	M	G	G	I	F	G	G	E
Template Known Secondary structure		T	T						S													S								G	G	G			S									T	T						T	T	S							T	T							T	T						T	T	T				T
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		H	S	G	V	N	D	E	T	Q	N	V	L	L	E	C	A	F	F	S	P	L	S	I	T	G	R	A	R	R	H	G	L	H	T	D	A	S	H	R	Y	E	R	G	V	D	P	A	L	Q	H	K	A	M	E	R	A	T	R	L	L	I	D	I	C	G	G	E	A	G	P	V	I	D	I	T	N	E	A	T	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	S	G	V	N	D	E	T	Q	N	V	L	L	E	C	A	F	F	S	P	L	S	I	T	G	R	A	R	R	H	G	L	H	T	D	A	S	H	R	Y	E	R	G	V	D	P	A	L	Q	H	K	A	M	E	R	A	T	R	L	L	I	D	I	C	G	G	E	A	G	P	V	I	D	I	T	N	E	A	T	L
Template Known Secondary structure		T	T	S			T	T													G	G	G	T	T	T						T															T	T																	S			B										T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Predicted Secondary structure
Query SS confidence
Query Sequence		P	K	R	A	T	I	T	L	R	R	S	K	L	D	R	L	I	G	H	H	I	A	D	E	Q	V	T	D	I	L	R	R	L	G	C	E	V	T	E	G	K	D	E	W	Q	A	V	A	P	S	W	R	F	D	M	E	I	E	E	D	L	V	E	E	V	A	R	V	Y	G	Y	N	N	I	P	D	E	P	V	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	K	R	A	T	I	T	L	R	R	S	K	L	D	R	L	I	G	H	H	I	A	D	E	Q	V	T	D	I	L	R	R	L	G	C	E	V	T	E	G	K	D	E	W	Q	A	V	A	P	S	W	R	F	D	M	E	I	E	E	D	L	V	E	E	V	A	R	V	Y	G	Y	N	N	I	P	D	E	P	V	Q
Template Known Secondary structure																				S															T							S	S								T	T		T	T			S														G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	L	I	M	G	T	H	R	E	A	D	L	S	L	K	R	V	K	T	L	L	N	D	K	G	Y	Q	E	V	I	T	Y	S	F	V	D	P	K	V	Q	Q	M	I	H	P	G	V	E	A	L	L	L	P	S	P	I	S	V	E	M	S	A	M	R	L	S	L	W	T	G	L	L	A	T	V	V	Y	N	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	S	L	I	M	G	T	H	R	E	A	D	L	S	L	K	R	V	K	T	L	L	N	D	K	G	Y	Q	E	V	I	T	Y	S	F	V	D	P	K	V	Q	Q	M	I	H	P	G	V	E	A	L	L	L	P	S	P	I	S	V	E	M	S	A	M	R	L	S	L	W	T	G	L	L	A	T	V	V	Y	N	Q
Template Known Secondary structure											T	T	B													S	S								S				T	T						S	T	T					B		S	S		S		G	G	G					S		S
Template Predicted Secondary structure
Template SS confidence
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
		561	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640
Predicted Secondary structure
Query SS confidence
Query Sequence		N	R	Q	Q	N	R	V	R	I	F	E	S	G	L	R	F	V	P	D	T	Q	A	P	L	G	I	R	Q	D	L	M	L	A	G	V	I	C	G	N	R	Y	E	E	H	W	N	L	A	K	E	T	V	D	F	Y	D	L	K	G	D	L	E	S	V	L	D	L	T	G	K	L	N	E	V	E	F	R	A	E	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	R	Q	Q	N	R	V	R	I	F	E	S	G	L	R	F	V	P	D	T	Q	A	P	L	G	I	R	Q	D	L	M	L	A	G	V	I	C	G	N	R	Y	E	E	H	W	N	L	A	K	E	T	V	D	F	Y	D	L	K	G	D	L	E	S	V	L	D	L	T	G	K	L	N	E	V	E	F	R	A	E	A
Template Known Secondary structure			T	T																	T	T	S	S	T	T													S	B	S	S	S	S		T	T	S				B													S	S	S	S	S	S			S	S
Template Predicted Secondary structure
Template SS confidence
		561	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640
		641	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720
Predicted Secondary structure
Query SS confidence
Query Sequence		N	P	A	L	H	P	G	Q	S	A	A	I	Y	L	K	G	E	R	I	G	F	V	G	V	V	H	P	E	L	E	R	K	L	D	L	N	G	R	T	L	V	F	E	L	E	W	N	K	L	A	D	R	V	V	P	Q	A	R	E	I	S	R	F	P	A	N	R	R	D	I	A	V	V	V	A	E	N	V	P	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	P	A	L	H	P	G	Q	S	A	A	I	Y	L	K	G	E	R	I	G	F	V	G	V	V	H	P	E	L	E	R	K	L	D	L	N	G	R	T	L	V	F	E	L	E	W	N	K	L	A	D	R	V	V	P	Q	A	R	E	I	S	R	F	P	A	N	R	R	D	I	A	V	V	V	A	E	N	V	P	A
Template Known Secondary structure			S	S	S		G	G	G						S	T	T	S															S	S			S	S									G	G	G	G	S	B												S													T	T	S
Template Predicted Secondary structure
Template SS confidence
		641	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720
		721	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	I	L	S	E	C	K	K	V	G	V	N	Q	V	V	G	V	N	L	F	D	V	Y	R	G	K	G	V	A	E	G	Y	K	S	L	A	I	S	L	I	L	Q	D	T	S	R	T	L	E	E	E	E	I	A	A	T	V	A	K	C	V	E	A	L	K	E	R	F	Q	A	S	L	R	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	D	I	L	S	E	C	K	K	V	G	V	N	Q	V	V	G	V	N	L	F	D	V	Y	R	G	K	G	V	A	E	G	Y	K	S	L	A	I	S	L	I	L	Q	D	T	S	R	T	L	E	E	E	E	I	A	A	T	V	A	K	C	V	E	A	L	K	E	R	F	Q	A	S	L	R	D
Template Known Secondary structure							T	T	T	T	S			S													S	S	S	S		T	T													S	S	S																			T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		721	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.