Job Description P07395 Confidence 100.00% Date Thu Jan 5 11:00:19 GMT 2012 Rank 4 Aligned Residues 561 % Identity 20% Template c3l4gL_ PDB info PDB header:ligase Chain: L: PDB Molecule:phenylalanyl-trna synthetase beta chain; PDBTitle: crystal structure of homo sapiens cytoplasmic phenylalanyl-trna2 synthetase Resolution 3.30 Å

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		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	G	A	V	L	P	G	D	F	K	I	K	A	A	K	L	R	G	E	P	S	E	G	M	L	C	S	F	S	E	L	G	I	S	D	D	H	S	G	I	I	E	L	P	A	D	A	P	I	G	T	D	I	R	E	Y	L	K	L	D	D	N	T	I	E	I	S	V	T	P	N	R	A	D	C	L	G	I	I
Query Conservation
Alig confidence																																																	.	.	.
Template Conservation																																																	.	.	.
Template Sequence		P	T	V	S	V	K	R	D	L	L	F	Q	A	L	G	R	T	Y	T	D	E	E	F	D	E	L	C	F	E	F	G	L	E	L	D	E	I	T	S	E	K	E	I	I	S	K	E	.	.	.	Q	G	N	V	K	A	A	G	A	S	D	V	V	L	Y	K	I	D	V	P	A	N	R	Y	D	L	L	C	L	E
Template Known Secondary structure																T	S				T	T									T	T									S	T	T	T	T	T	T	S	.	.	.	S	S	S					S	S		S	S									T	T		S	T	T	S	S
Template Predicted Secondary structure																																																	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.				.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.				.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure																																																									.	.	.
Query SS confidence																																																									.	.	.
Query Sequence		G	V	A	R	D	V	A	V	L	N	Q	L	P	L	V	Q	P	E	I	V	P	V	G	A	T	I	D	D	T	L	P	I	T	V	E	A	P	E	A	C	P	R	Y	L	G	R	V	V	K	G	I	N	V	K	A	.	.	.	P	T	P	L	W	M	K	E	K	L	R	R	C	G	I	R	S	I	D	A	V	V
Query Conservation																																																									.	.	.
Alig confidence																																																									.	.	.																				.
Template Conservation																																																																															.
Template Sequence		G	L	V	R	G	L	Q	V	F	K	E	R	I	K	A	P	V	Y	K	R	V	M	P	D	G	K	I	Q	K	L	I	I	T	E	E	T	A	K	I	R	P	F	A	V	A	A	V	L	R	N	I	K	F	T	K	D	R	Y	D	S	F	I	E	L	Q	E	K	L	H	Q	N	I	C	R	K	R	A	.	L	V
Template Known Secondary structure											T	T	S	S											S	S									T	T	T	T	T	T	S											B																	T	T	T	T	T	T	T	T	T	T	.	S
Template Predicted Secondary structure																																																																															.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.													.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.		.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.																																			.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.																																			.
Query Sequence		D	V	T	N	Y	V	L	L	E	L	G	Q	P	M	H	A	F	D	K	D	R	I	E	G	G	I	V	.	.	.	.	.	.	.	.	.	.	.	.	V	R	M	A	K	E	G	E	T	L	V	L	L	D	G	T	E	A	K	L	N	A	D	T	L	V	I	A	D	H	N	K	A	L	.	A	M	G	G	I	F
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.																																			.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.																																			.
Template Conservation
Template Sequence		A	I	G	T	H	D	L	D	T	L	S	G	P	F	T	Y	T	A	K	R	P	S	D	I	K	F	K	P	L	N	K	T	K	E	Y	T	A	C	E	L	M	N	I	Y	K	T	D	N	H	L	K	H	Y	L	H	I	I	E	N	K	P	L	Y	P	V	I	Y	D	S	N	G	V	V	L	S	M	P	P	I	I
Template Known Secondary structure								G	G	G			S									S	T	T					B	T	T		S	S											S	T	T		T	T	T	T	T	T	T	T	T	T			S	S								T	T							T	T	T
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	E	H	S	G	V	N	D	E	T	Q	N	V	L	L	E	C	A	F	F	S	P	L	S	I	T	G	R	A	R	R	H	G	L	H	T	D	A	S	H	R	Y	E	R	G	V	D	P	A	L	Q	H	K	A	M	E	R	A	T	R	L	L	I	D	I	C	G	G	E	A	G	P	V	I	D	I	T	N	E
Query Conservation
Alig confidence																																		.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	G	D	H	S	R	I	T	V	N	T	R	N	I	F	I	E	C	T	G	T	D	F	T	K	A	K	I	V	L	D	I	.	.	I	V	T	M	F	S	E	Y	C	E	N	Q	F	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	E	A	A	E	V	V	F	P	N	G	K	S	H	T
Template Known Secondary structure			B	S	T	T				T	T											S												.	.						G	G	G	B	T	T	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	T	S
Template Predicted Secondary structure																																		.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.			270	.	.	.	.	.	.	.	.	.	280	.	.	.																		.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.			440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.
Predicted Secondary structure																																												.	.
Query SS confidence																																												.	.
Query Sequence		A	T	L	P	K	R	A	T	I	T	L	R	R	S	K	L	D	R	L	I	G	H	H	I	A	D	E	Q	V	T	D	I	L	R	R	L	G	C	E	V	T	E	.	.	G	K	D	E	W	Q	A	V	A	P	S	W	R	F	D	M	E	I	E	E	D	L	V	E	E	V	A	R	V	Y	G	Y	N	N	I	P
Query Conservation																																												.	.
Alig confidence																																												.	.
Template Conservation
Template Sequence		F	P	E	L	A	Y	R	K	E	M	V	R	A	D	L	I	N	K	K	V	G	I	R	E	T	P	E	N	L	A	K	L	L	T	R	M	Y	L	K	S	E	V	I	G	D	G	N	Q	I	E	I	E	I	P	P	T	R	A	D	I	I	H	A	C	D	I	V	E	D	A	A	I	A	Y	G	Y	N	N	I	Q
Template Known Secondary structure								B														T															T	T							S	S	S	S						B		S	S		T	T			S														G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
		476	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.					.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.
Predicted Secondary structure																																																			.	.	.	.
Query SS confidence																																																			.	.	.	.
Query Sequence		D	E	P	V	Q	A	S	L	I	M	G	T	H	R	E	A	D	L	S	L	K	R	V	K	T	L	L	N	D	K	G	Y	Q	E	V	I	T	Y	S	F	V	D	P	K	V	Q	Q	M	I	.	.	.	.	H	P	G	V	E	A	L	L	L	P	S	P	I	S	V	E	M	S	A	M	R	L	S	L	W	T	G
Query Conservation																																																			.	.	.	.
Alig confidence								.																																											.	.	.	.
Template Conservation								.
Template Sequence		M	T	L	P	K	T	.	Y	T	I	A	N	Q	F	P	L	N	K	L	T	E	L	L	R	H	D	M	A	A	A	G	F	T	E	A	L	T	F	A	L	C	S	Q	E	D	I	A	D	K	L	G	V	D	I	S	A	T	K	A	V	H	I	S	N	P	K	T	A	E	F	Q	V	A	R	T	T	L	L	P	G
Template Known Secondary structure								.																							T	T								S								T	G	G	G	T			T	T	S	S				B		S	S		S	S	G	G	G	S				S		S
Template Predicted Secondary structure								.
Template SS confidence
		379	380	.	.	.	.		.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
		552	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	A	T	V	V	Y	N	Q	N	R	Q	Q	N	R	V	R	I	F	E	S	G	L	R	F	V	P	D	T	Q	A	P	L	G	I	R	Q	D	L	M	L	A	G	V	I	C	G	N	R	Y	E	E	H	W	N	L	A	K	E	T	V	D	F	Y	D	L	K	G	D	L	E	S	V	L	D	L	T	G	K	L
Query Conservation
Alig confidence															.																																		.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.																																		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	L	K	T	I	A	A	N	R	K	M	P	L	.	P	L	K	L	F	E	I	S	D	I	V	I	K	D	S	N	T	D	V	G	A	K	N	Y	R	H	L	C	A	V	Y	Y	N	.	.	.	.	.	.	.	.	.	.	.	K	N	P	G	F	E	I	I	H	G	L	L	D	R	I	M	Q	L	L	D	V	P
Template Known Secondary structure									T	T	T	S		S	.															T	T	S	S	S	S													S	.	.	.	.	.	.	.	.	.	.	.	S	S																	T	T
Template Predicted Secondary structure															.																																		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		458	.	460	.	.	.	.	.	.	.	.	.	470		.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.												.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.
		632						.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690
Predicted Secondary structure			.	.	.	.	.
Query SS confidence			.	.	.	.	.
Query Sequence		N	.	.	.	.	.	E	V	E	F	R	A	E	A	N	P	A	L	H	P	G	Q	S	A	A	I	Y	L	K	G	E	R	I	G	F	V	G	V	V	H	P	E	L	E	R	K	L	D	L	N	G	R	T	L	V	F	E	L	E	W	N	K	L	A
Query Conservation			.	.	.	.	.
Alig confidence			.	.	.	.	.
Template Conservation
Template Sequence		P	G	E	D	K	G	G	Y	V	I	K	A	S	E	G	P	A	F	F	P	G	R	C	A	E	I	F	A	R	G	Q	S	V	G	K	L	G	V	L	H	P	D	V	I	T	K	F	E	L	T	M	P	C	S	S	L	E	I	N	I	G	P	F	L
Template Known Secondary structure		B	S	S	T	T	S										T	T												T	T																	T	T			S										G	G	G
Template Predicted Secondary structure
Template SS confidence
		526	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.