Job Description P07395 Confidence 100.00% Date Thu Jan 5 11:00:19 GMT 2012 Rank 6 Aligned Residues 335 % Identity 17% Template c3cmqA_ PDB info PDB header:ligase Chain: A: PDB Molecule:phenylalanyl-trna synthetase, mitochondrial; PDBTitle: crystal structure of human mitochondrial phenylalanine trna2 synthetase Resolution 2.20 Å

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		458	.	460	.	.	.	.	.	.	.	.	.	470	.	.				.	.	.	.	.	.	.	480				.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.
Predicted Secondary structure																	.	.	.									.	.	.																																										.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.									.	.	.																																										.	.	.	.	.	.	.	.	.	.
Query Sequence		E	E	D	L	V	E	E	V	A	R	V	Y	G	Y	N	.	.	.	N	I	P	D	E	P	V	Q	.	.	.	A	S	L	I	M	G	T	H	R	E	A	D	L	S	L	K	R	V	K	T	L	L	N	D	K	G	Y	Q	E	V	I	T	Y	S	F	V	D	P	K	V	Q	.	.	.	.	.	.	.	.	.	.
Query Conservation																	.	.	.									.	.	.																																										.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.									.	.	.																																										.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	G	S	V	V	E	L	L	G	K	S	Y	P	Q	D	D	H	S	N	L	T	R	K	V	L	T	R	V	G	R	N	L	H	N	Q	Q	H	H	P	L	W	L	I	K	E	R	V	K	E	H	F	Y	K	Q	Y	V	G	R	F	G	T	P	L	F	S	V	Y	D	N	L	S	P	V	V	T	T	W	Q	N	F
Template Known Secondary structure				S					T	T							S	S									T	T	T	T			G	G	G	S	T	T																						S	S	S											S								T
Template Predicted Secondary structure
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		522	.	.	.	.	.	.	.				530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570																	.	.	.	.	.	.	.	.	.	580	.	.
Predicted Secondary structure										.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	M	I	H	P	G	V	E	.	.	.	A	L	L	L	P	S	P	I	S	V	E	M	S	A	M	R	L	S	L	W	T	G	L	L	A	T	V	V	Y	N	Q	N	R	Q	Q	N	R	V	R	I	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	S	G	L	R	F	V	P	D	T	Q	A
Query Conservation										.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	S	L	L	I	P	A	D	H	P	S	R	K	K	G	D	N	Y	Y	L	N	R	T	H	M	L	R	A	H	T	S	A	H	Q	W	D	L	L	H	A	G	L	D	A	F	L	V	V	G	D	V	Y	R	R	D	Q	I	D	S	Q	H	Y	P	I	F	H	Q	L	E	A	V	R	L	F	S	K	H	E	L	F
Template Known Secondary structure		G	G	G	T			T	T		G	G	G		G	G	G	S		B	S	S	S	S					S	S	G	G	G	G							T	T		S															B	T	T	B		S																	T
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		583	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.			610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.		.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.																								.
Query SS confidence																													.	.																								.
Query Sequence		P	L	G	I	R	Q	D	L	M	L	A	G	V	I	C	G	N	R	Y	E	E	H	W	N	L	A	K	.	.	E	T	V	D	F	Y	D	L	K	G	D	L	E	S	V	L	D	L	T	G	K	L	N	.	E	V	E	F	R	A	E	A	N	P	A	L	H	P	G	Q	S	A	A	I	Y	L	K	G	E	R	I
Query Conservation																													.	.																								.
Alig confidence																													.	.																								.
Template Conservation
Template Sequence		A	G	I	K	D	G	E	S	L	Q	L	F	E	Q	S	S	R	S	A	H	K	Q	E	T	H	T	M	E	A	V	K	L	V	E	F	D	L	K	Q	T	L	T	R	L	M	A	H	L	F	G	D	E	L	E	I	R	W	V	D	C	Y	F	P	F	T	H	P	S	F	E	M	E	I	N	F	H	G	E	W	L
Template Known Secondary structure		T	T	S	T	T	G	G	G			S	B							S	S			T	T	B																										T	T											T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		660	.	.			.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.		680	.	.	.	.	.	.	.	.	.	690	.	.																												.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.																		.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.																		.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	F	V	.	.	G	V	V	H	P	E	L	E	R	K	L	D	L	N	G	R	T	.	L	V	F	E	L	E	W	N	K	L	A	D	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V	P	Q	A	R	E	I	S	R	F	P	A	N	R	R	D
Query Conservation					.	.																		.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.																		.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	V	L	G	C	G	V	M	E	Q	Q	L	V	N	S	A	G	A	Q	D	R	I	G	W	A	F	G	L	G	L	E	R	L	A	M	I	L	Y	D	I	P	D	I	R	L	F	W	C	E	D	E	R	F	L	K	Q	F	C	V	S	N	I	N	Q	K	V	K	F	Q	P	L	S	K	Y	P	A	V	I	N	D
Template Known Secondary structure																	T	T		T	T																		S					G	G	G	G	G								G	G	G			S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		710	.	.	.	.	.	.	.		.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		I	A	V	V	V	A	E	N	.	V	P	A	A	D	I	L	S	E	C	K	K	V	G	V	N	Q	V	V	G	V	N	L	F	D	V	Y	R	G	K	G	V	A	E	G	Y	K	S	L	A	I	S	L	I	L	Q	D	T	S	R	T	L	E	E	E	E	I	A	A	T	V	A	K	C	V	E	A	L	K	E	R
Query Conservation										.
Alig confidence										.																																	.	.
Template Conservation																																											.	.
Template Sequence		I	S	F	W	L	P	S	E	N	Y	A	E	N	D	F	Y	D	L	V	R	T	I	G	G	D	L	V	E	K	V	D	L	I	D	K	F	V	H	P	K	T	.	.	H	K	T	S	H	C	Y	R	I	T	Y	R	H	M	E	R	T	L	S	Q	R	E	V	R	H	I	H	Q	A	L	Q	E	A	A	V	Q	L
Template Known Secondary structure								T	T																G	G	G													T	T	T	.	.														S	S	S
Template Predicted Secondary structure																																											.	.
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.			.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
		789	790	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	Q	A	S	L	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	G	V	E	G	R
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		409	410	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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