Job Description P07395 Confidence 100.00% Date Thu Jan 5 11:00:19 GMT 2012 Rank 2 Aligned Residues 773 % Identity 35% Template c2rhsB_ PDB info PDB header:ligase Chain: B: PDB Molecule:phenylalanyl-trna synthetase beta chain; PDBTitle: phers from staphylococcus haemolyticus- rational protein2 engineering and inhibitor studies Resolution 2.20 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	F	S	E	L	W	L	R	E	W	V	N	P	A	I	D	S	D	A	L	A	N	Q	I	T	M	A	G	L	E	V	D	G	V	E	P	V	A	G	S	F	H	G	V	V	V	G	E	V	V	E	C	A	Q	H	P	N	A	D	K	L	R	V	T	K	V	N	V	G	G	D	R	L	L	D	I	V	C	G
Query Conservation
Alig confidence																																																										.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.
Template Sequence		M	L	I	S	N	E	W	L	K	D	Y	V	D	A	G	V	K	V	E	D	L	A	E	R	I	T	R	T	G	I	E	V	D	N	M	I	D	Y	S	K	D	I	K	N	L	V	V	G	Y	I	Q	S	K	E	K	N	.	.	.	.	.	.	.	I	C	Q	V	D	I	G	E	E	E	P	V	Q	I	V	C	G
Template Known Secondary structure											T	T					S													T									T	T	T	T																.	.	.	.	.	.	.							S	S	S	S
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.								.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130							.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.
Query Sequence		A	P	N	C	R	Q	G	L	R	V	A	V	A	T	I	G	A	V	L	P	G	D	F	K	I	K	A	A	K	L	R	G	E	P	S	E	G	M	L	C	S	F	S	E	L	G	I	S	D	D	.	.	.	.	.	.	H	S	G	I	I	E	L	P	A	D	A	P	I	G	T	D	I	R	E	Y	L	K	L	D
Query Conservation																																																				.	.	.	.	.	.
Alig confidence																																	.	.	.																	.	.	.	.	.	.
Template Conservation																																	.	.	.
Template Sequence		A	P	N	V	D	A	G	Q	H	V	I	V	A	K	V	G	G	R	L	P	G	G	I	K	I	K	R	A	K	E	R	.	.	.	S	E	G	M	I	C	S	L	Q	E	I	G	I	S	S	N	V	V	P	K	A	Y	E	N	G	I	F	V	F	P	T	E	V	E	P	G	T	D	A	L	T	A	L	Y	L	N
Template Known Secondary structure			T	T			T	T													T	T	T										.	.	.			S					T	G	G	G	T			T	T	T	S		G	G	G	S	S	S			B		S	S				T	T	S	B					T	T		S
Template Predicted Secondary structure																																	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.				.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.			.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																																											.	.
Query SS confidence																																											.	.
Query Sequence		D	N	T	I	E	I	S	V	T	P	N	R	A	D	C	L	G	I	I	G	V	A	R	D	V	A	V	L	N	Q	L	P	L	V	Q	P	E	I	V	P	V	.	.	G	A	T	I	D	D	T	L	P	I	T	V	E	A	P	E	A	C	P	R	Y	L	G	R	V	V	K	G	I	N	V	K	A	P	T	P	L
Query Conservation																																											.	.
Alig confidence																																											.	.																																.
Template Conservation																																																																												.
Template Sequence		D	Q	V	M	E	F	D	L	T	P	N	R	A	D	A	L	S	M	V	G	T	A	Y	E	V	A	A	L	Y	Q	T	E	M	T	K	P	E	T	Q	S	N	E	T	S	E	S	A	T	N	E	L	S	V	T	I	D	N	P	E	K	V	P	Y	Y	S	A	R	V	V	K	N	V	S	I	.	E	P	S	P	I
Template Known Secondary structure											G	G	G	G	G	G	S	S												T	T														S	S	B	G	G	G	T						S		T	T	T		S									S				.
Template Predicted Secondary structure																																																																												.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.		.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence		W	M	K	E	K	L	R	R	C	G	I	R	S	I	D	A	V	V	D	V	T	N	Y	V	L	L	E	L	G	Q	P	M	H	A	F	D	K	D	R	I	E	G	G	.	I	V	V	R	M	A	K	E	G	E	T	L	V	L	L	D	G	T	E	A	K	L	N	A	D	T	L	V	I	A	D	H	N	K	A	L
Query Conservation																																													.
Alig confidence																																													.
Template Conservation
Template Sequence		W	V	Q	A	R	L	I	K	A	G	I	R	P	I	N	N	V	V	D	I	S	N	Y	V	L	L	E	Y	G	Q	P	L	H	M	F	D	Q	D	H	I	G	S	K	E	I	V	V	R	Q	A	K	D	E	E	T	M	T	T	L	D	N	N	E	R	K	L	V	D	T	D	I	V	I	S	N	G	Q	E	P	I
Template Known Secondary structure									T	T	T																			S								G	G	G	S	S	S	S									T	T					B	T	T	S							T	T							S	S	S
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	M	G	G	I	F	G	G	E	H	S	G	V	N	D	E	T	Q	N	V	L	L	E	C	A	F	F	S	P	L	S	I	T	G	R	A	R	R	H	G	L	H	T	D	A	S	H	R	Y	E	R	G	V	D	P	A	L	Q	H	K	A	M	E	R	A	T	R	L	L	I	D	I	C	G	G	E	A	G	P	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	A	G	V	M	G	G	D	F	S	E	V	T	E	Q	T	T	N	V	V	I	E	G	A	I	F	D	P	V	S	I	R	H	T	S	R	R	L	N	L	R	S	E	A	S	S	R	F	E	K	G	I	A	T	E	F	V	D	E	A	V	D	R	A	C	Y	L	L	Q	E	L	A	S	G	E	V	L	Q	D
Template Known Secondary structure				T	T	T			B	S	S	S	B			T	T																							T	T															G	G	G																						B
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	I	T	N	E	A	T	L	P	K	R	A	T	I	T	L	R	R	S	K	L	D	R	L	I	G	H	H	I	A	D	E	Q	V	T	D	I	L	R	R	L	G	C	E	V	T	E	G	K	D	E	W	Q	A	V	A	P	S	W	R	F	D	M	E	I	E	E	D	L	V	E	E	V	A	R	V	Y	G	Y
Query Conservation
Alig confidence			.
Template Conservation			.
Template Sequence		R	.	V	S	S	G	D	L	G	S	F	V	T	P	I	D	I	T	A	E	K	V	N	K	T	I	G	F	N	L	S	N	D	E	I	Q	S	I	F	R	Q	L	G	F	E	T	T	L	K	G	E	T	L	T	V	N	V	P	S	R	R	K	D	I	T	I	K	E	D	L	I	E	E	V	A	R	I	Y	G	Y
Template Known Secondary structure			.				S					S																	S														T	T							T	T								T	T	S	T	T			S	S													G
Template Predicted Secondary structure			.
Template SS confidence
		400		.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
		472	.	.	.	.	.	.	.	480	.	.		.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.		.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.																																															.
Query SS confidence													.																																															.
Query Sequence		N	N	I	P	D	E	P	V	Q	A	S	.	L	I	M	G	T	H	R	E	A	D	L	S	L	K	R	V	K	T	L	L	N	D	K	G	Y	Q	E	V	I	T	Y	S	F	V	D	P	K	V	Q	Q	M	I	H	P	G	V	.	E	A	L	L	L	P	S	P	I	S	V	E	M	S	A	M	R	L	S	L	W
Query Conservation													.																																															.
Alig confidence													.																																															.
Template Conservation
Template Sequence		D	E	I	P	S	S	L	P	V	F	G	E	V	T	S	G	E	L	T	D	R	Q	H	K	T	R	T	L	K	E	T	L	E	G	A	G	L	N	Q	A	I	T	Y	S	L	V	S	K	D	H	A	K	D	F	A	L	Q	E	R	P	T	I	S	L	L	M	P	M	S	E	A	H	A	T	L	R	Q	S	L	L
Template Known Secondary structure		G	G	S								S	S																							T	T								S				G	G	G	T	T	T	T		S	S								S	S		S		G	G	G	S				S		S
Template Predicted Secondary structure
Template SS confidence
		479	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.
		550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	L	L	A	T	V	V	Y	N	Q	N	R	Q	Q	N	R	V	R	I	F	E	S	G	L	R	F	V	P	D	T	Q	A	P	L	G	I	R	Q	D	L	M	L	A	G	V	I	C	G	N	R	Y	E	E	H	W	N	L	A	K	E	T	V	D	F	Y	D	L	K	G	D	L	E	S	V	L	D	L	T	G
Query Conservation
Alig confidence																																					.
Template Conservation																																					.
Template Sequence		P	H	L	I	E	A	T	A	Y	N	V	A	R	K	N	K	D	V	R	L	Y	E	I	G	R	V	F	F	G	N	G	E	G	E	L	.	P	D	E	V	E	Y	L	S	G	I	L	T	G	E	Y	V	V	N	A	W	Q	G	K	K	E	E	I	D	F	F	I	A	K	G	V	V	D	R	V	A	E	K	L	N
Template Known Secondary structure														T	T																		S	S			.													S						G	G	G	T																						T
Template Predicted Secondary structure																																					.
Template SS confidence
		559	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.		.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.
		630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.			.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.
Predicted Secondary structure																																																																.	.
Query SS confidence																																																																.	.
Query Sequence		K	L	N	E	V	E	F	R	A	E	A	N	P	A	L	H	P	G	Q	S	A	A	I	Y	L	K	G	E	R	I	G	F	V	G	V	V	H	P	E	L	E	R	K	L	D	L	N	G	R	T	L	V	F	E	L	E	W	N	K	L	A	D	.	.	R	V	V	P	Q	A	R	E	I	S	R	F	P	A	N	R
Query Conservation																																																																.	.
Alig confidence			.	.																																													.															.	.
Template Conservation			.	.																																													.
Template Sequence		L	.	.	E	F	S	Y	K	A	G	K	I	E	G	L	H	P	G	R	T	A	I	V	S	L	G	G	A	G	I	G	F	I	G	E	L	H	P	Q	V	A	A	D	N	D	L	K	.	R	T	Y	V	F	E	L	N	Y	D	A	M	M	Q	V	A	V	G	Y	I	N	Y	E	Q	I	P	K	F	P	G	V	T
Template Known Secondary structure			.	.										T	T												T	T																	T	T		S	.	S														S				S								S	S
Template Predicted Secondary structure			.	.																																													.
Template SS confidence
		638			.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.		.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.
		708	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	I	A	V	V	V	A	E	N	V	P	A	A	D	I	L	S	E	C	K	K	V	G	V	N	Q	V	V	G	V	N	L	F	D	V	Y	R	G	K	G	V	A	E	G	Y	K	S	L	A	I	S	L	I	L	Q	D	T	S	R	T	L	E	E	E	E	I	A	A	T	V	A	K	C	V	E	A	L	K	E
Query Conservation
Alig confidence																																																									.	.	.	.
Template Conservation																																																									.	.	.	.
Template Sequence		R	D	I	A	L	E	V	N	H	D	V	P	S	S	E	L	K	Q	I	I	H	N	N	G	E	D	I	L	Q	S	T	L	V	F	D	V	Y	E	G	E	H	L	E	K	G	K	K	S	V	A	I	R	L	N	Y	.	.	.	.	L	D	L	T	D	E	R	V	S	K	I	H	D	K	I	L	E	A	L	Q	A
Template Known Secondary structure										T	T															T	T	T												S	T	T	S		T	T											.	.	.	.
Template Predicted Secondary structure																																																									.	.	.	.
Template SS confidence
		715	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.					770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790
		788	.	790	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	Q	A	S	L	R
Query Conservation
Alig confidence			.
Template Conservation			.
Template Sequence		Q	.	G	A	T	I	R
Template Known Secondary structure		T	.	T		B
Template Predicted Secondary structure			.
Template SS confidence
		795		.	.	.	.	800