Job Description P07395 Confidence 100.00% Date Thu Jan 5 11:00:19 GMT 2012 Rank 3 Aligned Residues 771 % Identity 37% Template c2akwB_ PDB info PDB header:ligase Chain: B: PDB Molecule:phenylalanyl-trna synthetase beta chain; PDBTitle: crystal structure of t.thermophilus phenylalanyl-trna synthetase2 complexed with p-cl-phenylalanine Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	F	S	E	L	W	L	R	E	W	V	N	P	A	I	D	S	D	A	L	A	N	Q	I	T	M	A	G	L	E	V	D	G	V	E	P	V	A	G	S	F	H	G	V	V	V	G	E	V	V	E	C	A	Q	H	P	N	A	D	K	L	R	V	T	K	V	N	V	G	G	D	R	L	L	D	I	V	C	G
Query Conservation
Alig confidence																																																												.												.	.
Template Conservation																																																												.												.	.
Template Sequence		M	R	V	P	F	S	W	L	K	A	Y	V	P	E	L	E	S	P	E	V	L	E	E	R	L	A	G	L	G	F	E	T	D	R	I	E	R	V	F	P	I	P	R	G	V	V	F	A	R	V	L	E	A	H	P	I	P	G	.	T	R	L	K	R	L	V	L	D	A	G	.	.	R	T	V	E	V	V	S	G
Template Known Secondary structure										T	T	T	S	T	T															T														T	T													T	T	.	S	S								S	S	.	.	S
Template Predicted Secondary structure																																																												.												.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.			70	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.		.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.																																									.
Query SS confidence																							.																																									.
Query Sequence		A	P	N	C	R	Q	G	L	R	V	A	V	A	T	I	G	A	V	L	P	G	.	D	F	K	I	K	A	A	K	L	R	G	E	P	S	E	G	M	L	C	S	F	S	E	L	G	I	S	D	D	H	S	G	I	I	E	L	P	A	D	A	.	P	I	G	T	D	I	R	E	Y	L	K	L	D	D	N	T	I
Query Conservation																							.																																									.
Alig confidence																							.																																									.											.
Template Conservation																																																																											.
Template Sequence		A	E	N	A	R	K	G	I	G	V	A	L	A	L	P	G	T	E	L	P	G	L	G	Q	K	V	G	E	R	V	I	Q	G	V	R	S	F	G	M	A	L	S	P	R	E	L	G	V	G	E	Y	G	G	G	L	L	E	F	P	E	D	A	L	P	P	G	T	P	L	S	E	A	W	.	P	E	E	V	V	L
Template Known Secondary structure			T	T			T	T								T	T		B		T	T	T	S	S	B							T	T					S									T	S	S	S			S	S						T	T	S	S		T	T		B	G	G	G	G	S	.
Template Predicted Secondary structure																																																																											.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150		.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	S	V	T	P	N	R	A	D	C	L	G	I	I	G	V	A	R	D	V	A	V	L	N	Q	L	P	L	V	Q	P	E	I	V	P	V	G	A	T	I	D	D	T	L	P	I	T	V	E	A	P	E	A	C	P	R	Y	L	G	R	V	V	K	G	I	N	V	K	A	P	T	P	L	W	M	K	E	K	L
Query Conservation
Alig confidence																																.																																						.
Template Conservation																																.																																						.
Template Sequence		D	L	E	V	T	P	N	R	P	D	A	L	G	L	L	G	L	A	R	D	L	H	A	L	G	Y	A	L	V	E	.	P	E	A	A	L	K	A	E	A	L	P	L	P	F	A	L	K	V	E	D	P	E	G	A	P	H	F	T	L	G	Y	A	F	G	L	R	V	.	A	P	S	P	L	W	M	Q	R	A	L
Template Known Secondary structure							T	T		G	G	G	G	S											T	T						.													S	S					S		T	T	T		S									S				.
Template Predicted Secondary structure																																.																																						.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.		.	.	.	.	.	.	230	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.					.	.	.	.	310	.	.	.	.
Predicted Secondary structure																																																																					.	.	.	.
Query SS confidence																																																																					.	.	.	.
Query Sequence		R	R	C	G	I	R	S	I	D	A	V	V	D	V	T	N	Y	V	L	L	E	L	G	Q	P	M	H	A	F	D	K	D	R	I	E	G	G	I	V	V	R	M	A	K	E	G	E	T	L	V	L	L	D	G	T	E	A	K	L	N	A	D	T	L	V	I	A	.	.	.	.	D	H	N	K	A	L	A	M	G
Query Conservation																																																																					.	.	.	.
Alig confidence																																																																					.	.	.	.
Template Conservation
Template Sequence		F	A	A	G	M	R	P	I	N	N	V	V	D	V	T	N	Y	V	M	L	E	R	A	Q	P	M	H	A	F	D	L	R	F	V	G	E	G	I	A	V	R	R	A	R	E	G	E	R	L	K	T	L	D	G	V	E	R	T	L	H	P	E	D	L	V	I	A	G	W	R	G	E	E	S	F	P	L	G	L	A
Template Known Secondary structure				T	T																			T												B	T									T	T					B	T	T	S							T	T	S								T	T								T
Template Predicted Secondary structure
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	F	G	G	E	H	S	G	V	N	D	E	T	Q	N	V	L	L	E	C	A	F	F	S	P	L	S	I	T	G	R	A	R	R	H	G	L	H	T	D	A	S	H	R	Y	E	R	G	V	D	P	A	L	Q	H	K	A	M	E	R	A	T	R	L	L	I	D	I	C	G	G	E	A	G	P	V	I	D	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	V	M	G	G	A	E	S	E	V	R	E	D	T	E	A	I	A	L	E	V	A	C	F	D	P	V	S	I	R	K	T	A	R	R	H	G	L	R	T	E	A	S	H	R	F	E	R	G	V	D	P	L	G	Q	V	P	A	Q	R	R	A	L	S	L	L	Q	A	L	A	G	A	R	V	A	E	A	L	L	E
Template Known Secondary structure		T	T			B	S	S	S				T	T																							T	T															T	T																							S
Template Predicted Secondary structure
Template SS confidence
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	N	E	A	T	L	P	K	R	A	T	I	T	L	R	R	S	K	L	D	R	L	I	G	H	H	I	A	D	E	Q	V	T	D	I	L	R	R	L	G	C	E	V	T	E	G	K	D	E	W	Q	A	V	A	P	S	W	R	F	D	M	E	I	E	E	D	L	V	E	E	V	A	R	V	Y	G	Y	N	N	I
Query Conservation
Alig confidence							.	.
Template Conservation							.	.
Template Sequence		A	G	S	P	K	.	.	P	P	E	A	I	P	F	R	P	E	Y	A	N	R	L	L	G	T	S	Y	P	E	A	E	Q	I	A	I	L	K	R	L	G	C	R	V	E	G	E	G	P	T	Y	R	V	T	P	P	S	H	R	L	D	L	R	L	E	E	D	L	V	E	E	V	A	R	I	Q	G	Y	E	T	I
Template Known Secondary structure							.	.																	T															T	T					S		S	S	S							T	T		T	T			S														G	G	G	S
Template Predicted Secondary structure							.	.
Template SS confidence
		395	.	.	.	.			400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.
		475	.	.	.	.	480	.	.	.	.	.			.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		P	D	E	P	V	Q	A	S	L	I	M	.	.	G	T	H	R	E	A	D	L	S	L	K	R	V	K	T	L	L	N	D	K	G	Y	Q	E	V	I	T	Y	S	F	V	D	P	K	V	Q	Q	M	I	H	P	G	V	E	A	L	L	L	P	S	P	I	S	V	E	M	S	A	M	R	L	S	L	W	T	G	L
Query Conservation													.	.
Alig confidence													.	.
Template Conservation
Template Sequence		P	L	A	L	P	A	F	F	P	A	P	D	N	R	G	V	E	A	P	Y	R	K	E	Q	R	L	R	E	V	L	S	G	L	G	F	Q	E	V	Y	T	Y	S	F	M	D	P	E	D	A	R	R	F	R	L	D	P	P	R	L	L	L	L	N	P	L	A	P	E	K	A	A	L	R	T	H	L	F	P	G	L
Template Known Secondary structure												G	G	G	T	T	T	T																	T								S				T	T					T	T					S		B		S	S		S	S	G	G	G	S				S		S
Template Predicted Secondary structure
Template SS confidence
		473	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.
		553	.	.	.	.	.	.	560	.	.	.	.	.	.		.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		L	A	T	V	V	Y	N	Q	N	R	Q	Q	N	R	.	V	R	I	F	E	S	G	L	R	F	V	P	D	T	Q	A	P	L	G	I	R	Q	D	L	M	L	A	G	V	I	C	G	N	R	Y	E	E	H	W	N	L	A	K	E	T	V	D	F	Y	D	L	K	G	D	L	E	S	V	L	D	L	T	G	K	L
Query Conservation																.
Alig confidence																.														.	.	.	.	.	.	.	.																			.																									.
Template Conservation																														.	.	.	.	.	.	.	.																			.																									.
Template Sequence		V	R	V	L	K	E	N	L	D	L	D	R	P	E	R	A	L	L	F	E	V	G	R	V	F	R	E	R	.	.	.	.	.	.	.	.	E	E	T	H	L	A	G	L	L	F	G	E	G	V	G	L	P	W	.	A	K	E	R	L	S	G	Y	F	L	L	K	G	Y	L	E	A	L	F	A	R	L	G	L	.
Template Known Secondary structure												S			S	B											S	S	S	.	.	.	.	.	.	.	.											B	S					T	T	.	S						S															T	T		.
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.																			.																									.
Template SS confidence
		553	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580									.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.		.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.
		632	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	E	V	E	F	R	A	E	A	N	P	A	L	H	P	G	Q	S	A	A	I	Y	L	K	G	E	R	I	G	F	V	G	V	V	H	P	E	L	E	R	K	L	D	L	N	G	R	T	L	V	F	E	L	E	W	N	K	L	A	D	R	V	V	P	Q	A	R	E	I	S	R	F	P	A	N	R	R	D	I	A
Query Conservation
Alig confidence		.																																													.													.	.
Template Conservation		.																																													.													.	.
Template Sequence		.	A	F	R	V	E	A	Q	A	F	P	F	L	H	P	G	V	S	G	R	V	L	V	E	G	E	E	V	G	F	L	G	A	L	H	P	E	I	A	Q	E	L	E	L	P	.	P	V	H	L	F	E	L	R	L	P	L	P	.	.	D	K	P	L	A	F	Q	D	P	S	R	H	P	A	A	F	R	D	L	A
Template Known Secondary structure		.										T	T												T	T																	T	T			.									S	S			.	.											S	S
Template Predicted Secondary structure		.																																													.													.	.
Template SS confidence
			623	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.		.	.	.	670	.	.	.	.	.	.	.	.			.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.
		712	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	V	A	E	N	V	P	A	A	D	I	L	S	E	C	K	K	V	G	V	N	Q	V	V	G	V	N	L	F	D	V	Y	R	G	K	G	V	A	E	G	Y	K	S	L	A	I	S	L	I	L	Q	D	T	S	R	T	L	E	E	E	E	I	A	A	T	V	A	K	C	V	E	A	L	K	E	R	F	Q	A
Query Conservation
Alig confidence																																																																															.
Template Conservation																																																																															.
Template Sequence		V	V	V	P	A	P	T	P	Y	G	E	V	E	A	L	V	R	E	A	A	G	P	Y	L	E	S	L	A	L	F	D	L	Y	Q	G	P	P	L	P	E	G	H	K	S	L	A	F	H	L	R	F	R	H	P	K	R	T	L	R	D	E	E	V	E	E	A	V	S	R	V	A	E	A	L	R	A	R	.	G	F
Template Known Secondary structure						T	T	S													S		T	T												S	S	S	S		S	S													S	S	S																				T	T	.	T
Template Predicted Secondary structure																																																																															.
Template SS confidence
		699	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.		.	.
		792	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	L	R
Template Known Secondary structure				S
Template Predicted Secondary structure
Template SS confidence
		778	.	780