 |
Job Description | P0ABR9 | Confidence | 46.86% | Date | Thu Jan 5 11:16:10 GMT 2012 |
Rank | 23 | Aligned Residues | 130 |
% Identity | 12% | Template | c1h6dL_ |
PDB info |
PDB header:protein translocation | Chain: L: PDB Molecule:precursor form of glucose-fructose |
PDBTitle: oxidized precursor form of glucose-fructose oxidoreductase2 from zymomonas mobilis complexed with glycerol
|
Resolution | 2.05 Å |
|
 |
  |   |
8 | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | |
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | S | H | S | P | L | V | G | Y | V | D | P | A | Q | E | V | L | D | E | V | N | G | V | I | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
A | S | A | R | E | R | I | A | A | F | S | P | E | L | V | V | L | F | A | P | D | H | Y | N | G | F | F | Y | D | V | M | P | P | F | C | L | G | V | G | A | T | A | I | G | D | F |
Query Conservation |   |
  |
|
|   |
|   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|   | . | . | . | . | . | . | . | . | . | . |   |   |
|   |   |   |
|   |   |   |   |
|
|   |
|
|
|
|
|
|
|
|   |   |   |   |
|   |   |   |   |
|   |
|   |
|   |   |   |   |   |   |   |
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|
|
|
|   |
|   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|   |   |   |   |
|
|   |
|   |
|   |
|
|   |   |   |
| . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |
|
|   |
|
|
|
|
Template Sequence |   |
C | Q | H | S | R | I | E | A | L | V | S | G | N | A | E | K | A | K | I | V | A | A | E | Y | G | V | D | P | R | K | I | Y | D | Y | S | N | F | D | K | I | A | K | D | P | K | I | D | A | V | Y | I | I | L | P | N | S | L | H | . |
. |
. |
. |
. |
. |
. |
. |
. |
A | E | F | A | I | R | A | F | K | A | G | K | H |
Template Known Secondary structure |   |
| S | S |  |  |  |  |  |  |  |
| S |
|  |  |  |  |  |  |  |  |  |  | T | T |
|
| G | G | G |  |  |
| S | S | G | G | G | G | G | G | G |
| T | T |
|
|  |  |  |  |
| S |
| G | G | G |  | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  | T | T |
|  |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |  | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
106 | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | |
|
|
|
|
|
|
|
|
. | . | . | . | . | . | 170 | . | . | . | . | . | . |
  |
  |   |
78 | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | S | A | A | G | E | L | P | V | P | V | E | L | A | E | A | C | A | H | A | V | M | K | S | G | I | D | L | A | V | S | Y | C | M | Q | V | D | H | G | F | A | Q | P | L | E | F | L | L | G | G | L | D | K | V | P | V | L | P | V | F | I | N | G | V | A | T | P | L | P | G |
Query Conservation |   |
  |   |   |   |   |   |
|   |   |   |   |
|
|
|   |   |
|   |   |   |
|   |   |   |
|
|
|   |   |   |   |   |   |   |   |
|
|
|
|   |   |
|
|
|   |
|
|   |   |   |   |   |   |   |
|
|
|
|
|   |
|
|   |   |   |   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|
|
|
|
|   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |
|   |   |   |   |
|
|   |   |
|   |   |
|   |
| . |
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
V | M | C | E | K | P | M | A | T | S | V | A | D | C | Q | R | M | I | D | A | A | K | A | A | N | K | K | L | M | I | G | Y | R | C | H | Y | D | P | M | N | R | A | A | V | K | L | I | R | E | N | Q | L | . |
G | K | L | G | M | V | T | T | D | N | S | D | V | M | D | Q | N |
Template Known Secondary structure |   |
 |  |  |
| S | S |
|
| S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
|  |  |  |
|
| G | G | G | G |
|  |  |  |  |  |  |  |  |  |  |  | T | T | T | T | . |
| S |  |  |  |  |  |  |  |  |  |
|
|
|
| T | T |
Template Predicted Secondary structure |   |
 |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . |
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
177 | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | |
. | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|