Job Description P09029 Confidence 100.00% Date Thu Jan 5 11:01:47 GMT 2012 Rank 19 Aligned Residues 342 % Identity 15% Template c3u9sE_ PDB info PDB header:ligase Chain: E: PDB Molecule:methylcrotonyl-coa carboxylase, alpha-subunit; PDBTitle: crystal structure of p. aeruginosa 3-methylcrotonyl-coa carboxylase2 (mcc) 750 kd holoenzyme, coa complex Resolution 3.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30			.	.	.	.	.	.	.	.	.	40	.	.	.																														.	.	.	.	.
Predicted Secondary structure																																.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Query SS confidence																																.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Query Sequence		M	K	Q	V	C	V	L	G	N	G	Q	L	G	R	M	L	R	Q	A	G	E	P	L	G	I	A	V	W	P	V	.	.	G	L	D	A	E	P	A	A	V	P	F	Q	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	I	T	A	.
Query Conservation																																.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Alig confidence																																.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Template Conservation
Template Sequence		I	Q	R	L	L	V	A	N	R	G	E	I	A	C	R	V	M	R	S	A	R	A	L	G	I	G	S	V	A	V	H	S	D	I	D	R	H	A	R	H	V	A	E	A	D	I	A	V	D	L	G	G	A	K	P	A	D	S	Y	L	R	G	D	R	I	I	A	A	A	L	A	S	G	A	Q	A	I	H	P	G
Template Known Secondary structure			S																					T	T									S	T	T	S	S		S	T	T	T	S	S	S								S	S	S	T	T	T	T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
					49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.			.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure		.	.	.																																																			.	.
Query SS confidence		.	.	.																																																			.	.
Query Sequence		.	.	.	E	I	E	R	W	P	E	T	A	L	T	R	E	L	A	R	H	P	A	F	V	N	R	D	V	F	P	I	I	A	D	R	L	T	Q	K	Q	L	F	D	K	L	H	L	P	T	A	P	W	Q	.	.	L	L	A	E	R	S	E	W	P	A	V	F	D	R	L	G	E	L	A	I	V	K	R	R	T
Query Conservation		.	.	.																																																			.	.
Alig confidence		.	.	.																																																			.	.																								.	.
Template Conservation																																																																																.	.
Template Sequence		Y	G	F	L	S	E	N	A	D	F	A	R	A	C	E	E	A	G	L	L	F	L	G	P	P	A	A	A	I	D	A	M	G	S	K	S	A	A	K	A	L	M	E	E	A	G	V	P	L	V	P	G	Y	H	G	E	A	Q	D	L	E	T	F	R	R	E	A	G	R	I	G	Y	P	V	L	L	K	A	.	.
Template Known Secondary structure		S	S	T	T	S	S		T								T	T	T				S	S	S								T	T	S										T	T	T									S	S				T	T								T	T		S							.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.			.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.		.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.
Predicted Secondary structure																									.	.																																				.																.
Query SS confidence																									.	.																																				.																.
Query Sequence		G	G	Y	D	G	R	G	Q	W	R	L	R	A	N	E	T	E	Q	L	P	A	E	C	.	.	Y	G	E	C	I	V	E	Q	G	I	N	F	S	G	E	V	S	L	V	G	A	R	G	F	D	G	S	T	V	F	Y	P	L	T	H	.	N	L	H	Q	D	G	I	L	R	T	S	V	A	F	P	.	Q	A	N
Query Conservation																									.	.																																				.																.
Alig confidence		.	.	.	.	.																			.	.																																				.																.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	A	A	M	K	V	V	E	R	E	A	E	L	A	E	A	L	S	S	A	Q	R	A	R	M	L	V	E	K	Y	L	L	K	P	R	H	V	E	I	Q	V	F	A	D	R	H	G	H	C	L	Y	L	N	E	R	D	C	S	I	Q	R	R	H	Q	K	V	V	E	E	A	P	A	P	G	L	G
Template Known Secondary structure		.	.	.	.	.								S	S	G	G	G	T					S													S	S		B										T	T	S													B	S	S	S	S	B						S		S	S
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.					.	.
Predicted Secondary structure																																				.																																								.	.	.	.
Query SS confidence																																				.																																								.	.	.	.
Query Sequence		A	Q	Q	Q	A	Q	A	E	E	M	L	S	A	I	M	Q	E	L	G	Y	V	G	V	M	A	M	E	C	F	V	T	P	Q	G	.	L	L	I	N	E	L	A	P	R	V	H	N	S	G	H	W	T	Q	N	G	A	S	I	S	Q	F	E	L	H	L	R	A	I	T	D	L	P	L	P	.	.	.	.	Q	P
Query Conservation																																				.																																								.	.	.	.
Alig confidence																																				.																																								.	.	.	.
Template Conservation
Template Sequence		A	E	L	R	R	A	M	G	E	A	A	V	R	A	A	Q	A	I	G	Y	V	G	A	G	T	V	E	F	L	L	D	E	R	G	Q	F	F	F	M	E	M	N	T	R	L	Q	V	E	H	P	V	T	E	A	I	T	G	L	D	L	V	A	W	Q	I	R	V	A	R	G	E	A	L	P	L	T	Q	E	Q	V
Template Known Secondary structure																			T	T			S								B		T	T	S									S	S			T	T									T											T	T	S				S	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.														.	.	.	.	.	.	.	300	.	.	.	.	.				.	.	.	.	310	.			.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.							.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.							.	.
Query Sequence		V	V	N	N	P	S	V	M	I	N	L	I	G	S	D	V	N	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	D	W	L	K	L	P	L	V	H	L	H	W	Y	.	.	.	D	K	E	V	R	P	.	.	G	R	K	V	G	H	L	N	L	T	D	S	D	T	S	R	L	T	A	T	L	E	A	L	I
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.							.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.							.	.
Template Conservation
Template Sequence		P	L	N	G	H	A	I	E	V	R	L	Y	A	E	D	P	E	G	D	F	L	P	A	S	G	R	L	M	L	Y	R	E	A	A	A	G	P	G	R	R	V	D	S	G	V	R	E	G	D	E	V	S	P	F	Y	D	P	M	L	A	K	L	I	A	W	G	E	T	R	E	E	A	R	Q	R	L	L	A	M	L
Template Known Secondary structure					S									S	S		T	T	T	T	S						B		S								B	T	T									T	T		B			S	S	S												S	S
Template Predicted Secondary structure
Template SS confidence
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
		337	.	.	340	.	.		.	.	.	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		P	L	L	P	P	E	.	Y	A	S	G	V	I	W
Query Conservation								.
Alig confidence								.
Template Conservation
Template Sequence		A	E	T	S	V	G	G	L	R	T	N	L	A	F
Template Known Secondary structure								S	S			T
Template Predicted Secondary structure
Template SS confidence
		456	.	.	.	460	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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