Job Description P09029 Confidence 100.00% Date Thu Jan 5 11:01:47 GMT 2012 Rank 42 Aligned Residues 251 % Identity 15% Template c3tqtB_ PDB info PDB header:ligase Chain: B: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: structure of the d-alanine-d-alanine ligase from coxiella burnetii Resolution 1.88 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.										.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	Q	V	C	V	L	G	N	G	Q	.	.	.	.	.	.	.	.	.	L	G	R	M	L	R	Q	A	G	E	P	L	G	I	A	V	W	P	V	G	L	D	A	E	P	A	A	V	P	F	Q	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation												.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	H	I	S	V	L	C	G	G	Q	S	T	E	H	E	I	S	I	Q	S	A	K	N	I	V	N	T	L	D	A	A	K	Y	L	I	S	V	I	F	I	D	H	V	G	R	W	Y	L	I	D	Q	P	E	M	F	L	A	H	S	P	D	H	L	V	K	E	G	S	A	R	P	I	T	I	A	F	K	P	W	Q
Template Known Secondary structure											S	S	T	T															S		T	T	T										T	T	S														S									T		S
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
											44	.	.	.	.						.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.						.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.						.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	S	V	I	T	A	.	.	.	.	.	E	I	E	R	W	P	E	T	A	L	T	R	E	L	A	R	H	P	A	F	V	N	R	D	V	F	P	I	I	A	D	R	L	T	Q	K	Q	L	F	D	K	L	H	L	P	T	A	P	W	Q	L	L	A	E	R	S	E	W	P	A	V
Query Conservation		.	.	.	.	.	.	.	.	.						.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.						.	.	.	.	.
Template Conservation
Template Sequence		S	L	D	G	R	R	Y	S	A	D	C	V	F	P	M	V	H	G	T	Q	G	E	D	G	A	L	Q	G	L	L	E	L	L	N	L	P	Y	V	G	A	N	V	Q	S	S	A	V	C	M	E	K	D	L	T	K	T	V	L	R	A	G	G	I	P	V	V	D	W	H	T	L	S	P	R	D	A	T	E	G	V
Template Known Secondary structure											S								S	T	T	T	T	S	S									T	T			B	S	S											S											T	T			B								T	T	S			T	T
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		110					.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.					.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure			.	.	.	.																																					.	.	.	.
Query SS confidence			.	.	.	.																																					.	.	.	.
Query Sequence		F	.	.	.	.	D	R	L	G	E	L	A	I	V	K	R	R	T	G	G	Y	D	G	R	G	Q	W	R	L	R	A	N	E	T	E	Q	L	P	A	E	C	.	.	.	.	Y	G	E	C	I	V	E	Q	G	I	N	F	S	G	E	V	S	L	V	G	A	R	G	F	D	G	S	T	V	F	Y	P	L	T	H
Query Conservation			.	.	.	.																																					.	.	.	.
Alig confidence			.	.	.	.																																					.	.	.	.												.																		.	.	.	.	.	.
Template Conservation																																																										.																		.	.	.	.	.	.
Template Sequence		Y	Q	R	L	L	D	R	W	G	T	S	E	L	F	V	K	A	V	S	L	G	S	S	V	A	T	L	P	V	K	T	E	T	E	F	T	K	A	V	K	E	V	F	R	Y	D	D	R	L	M	V	E	P	R	I	R	.	G	R	E	I	E	C	A	V	L	G	N	G	A	P	K	A	S	.	.	.	.	.	.
Template Known Secondary structure										S		S							S	S			S	G	G	G						S												T	T	T		S										.	S										S	S	S					.	.	.	.	.	.
Template Predicted Secondary structure																																																										.																		.	.	.	.	.	.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.					.	.	.	.	.
Predicted Secondary structure																																																						.																			.	.	.	.
Query SS confidence																																																						.																			.	.	.	.
Query Sequence		N	L	H	Q	D	G	I	L	R	T	S	V	A	F	P	Q	A	N	A	Q	Q	Q	A	Q	A	E	E	M	L	S	A	I	M	Q	E	L	G	Y	V	G	V	M	A	M	E	C	F	V	T	P	Q	G	.	L	L	I	N	E	L	A	P	R	V	H	N	S	G	H	W	T	Q	.	.	.	.	N	G	A	S	I
Query Conservation																																																						.																			.	.	.	.
Alig confidence		.	.	.	.	.	.	.																																														.																			.	.	.	.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	L	P	G	E	I	I	T	T	T	T	S	E	S	V	T	K	Q	I	Q	Q	I	A	I	D	A	F	K	M	V	H	C	S	G	M	A	R	V	D	F	F	V	T	P	N	N	K	V	L	V	N	E	I	N	T	I	P	G	F	T	N	I	S	M	Y	P	K	M	W	E	A	S	G	L
Template Known Secondary structure		.	.	.	.	.	.	.																													T	T													T	T										S	S				S	T	T										T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		257	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	F	E	L	H	L	R	A	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	C	P	N	L	L	D	Q	L	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		339	340	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions