Job Description P09029 Confidence 98.21% Date Thu Jan 5 11:01:47 GMT 2012 Rank 89 Aligned Residues 228 % Identity 8% Template c3tinA_ PDB info PDB header:ligase Chain: A: PDB Molecule:ttl protein; PDBTitle: tubulin tyrosine ligase Resolution 2.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		6	.	.	.	10	.	.	.			.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure										.	.
Query SS confidence										.	.
Query Sequence		V	L	G	N	G	Q	L	G	.	.	R	M	L	R	Q	A	G	E	P	L	G	I	A	V	W	P	V	G	L	D	A	E	P	A	A	V	P	F	Q	Q	S	V	I	T	A	E	I	E	R	W	P	E	T	A	L	T	R	E	L	A	R	H	P	A	F	V	N	R	D	V	F	P	I	I	A	D	R	L	T	Q
Query Conservation										.	.
Alig confidence										.	.																							.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.
Template Sequence		V	V	R	D	E	N	S	T	V	Y	A	E	V	A	K	I	L	L	A	S	G	Q	W	K	R	L	K	R	D	N	P	K	.	.	.	.	.	.	.	F	N	L	M	L	G	E	R	N	R	L	P	F	G	R	L	G	H	E	P	G	L	V	Q	L	V	N	Y	Y	R	G	A	D	K	L	C	R	K	A	S	L
Template Known Secondary structure				S			S		S											T	T	T	S						T	T		S		.	.	.	.	.	.	.		S						S	S	S			G	G	G	S	S		S	T	T						S	S		T	T	T					S
Template Predicted Secondary structure																																		.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.								.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		84	.	.	.	.							.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.						.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.	150	.
Predicted Secondary structure							.	.	.	.	.	.																			.	.	.	.	.																																							.
Query SS confidence							.	.	.	.	.	.																			.	.	.	.	.																																							.
Query Sequence		K	Q	L	F	D	.	.	.	.	.	.	K	L	H	L	P	T	A	P	W	Q	L	L	A	E	R	S	E	W	.	.	.	.	.	P	A	V	F	D	R	L	G	E	L	A	I	V	K	R	R	T	G	G	Y	D	G	R	G	Q	W	R	L	R	A	N	E	T	E	Q	L	P	A	.	E	C	Y	G	E	C	I
Query Conservation							.	.	.	.	.	.																			.	.	.	.	.																																							.
Alig confidence							.	.	.	.	.	.																			.	.	.	.	.																	.	.	.	.																			.
Template Conservation																																																				.	.	.	.
Template Sequence		V	K	L	I	K	T	S	P	E	L	T	E	T	C	T	W	F	P	E	S	Y	V	I	Y	P	E	R	E	E	F	R	S	S	F	N	K	K	K	E	N	E	E	G	N	V	W	I	A	K	S	.	.	.	.	S	S	G	G	I	L	I	S	S	D	A	T	E	L	L	D	F	I	D	N	Q	G	Q	V	H	V
Template Known Secondary structure													T	T			S	S																						T	T	T	S									.	.	.	.	S								S		T					T	T	S	T	T	T	T	S
Template Predicted Secondary structure																																																				.	.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.					.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		152	.	.	.	.	.								.	.	160			.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.											.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure								.	.	.	.	.	.	.				.	.																																		.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.				.	.																																		.	.	.	.	.	.	.	.	.	.
Query Sequence		V	E	Q	G	I	N	.	.	.	.	.	.	.	F	S	G	.	.	E	V	S	L	V	G	A	R	G	F	D	G	S	T	V	F	Y	P	L	T	H	N	L	H	Q	D	G	I	L	R	T	S	V	.	.	.	.	.	.	.	.	.	.	A	F	P	Q	A	N	A	Q	Q	Q	A	Q	A	E	E	M	L	S	A
Query Conservation								.	.	.	.	.	.	.				.	.																																		.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.				.	.																																		.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	Q	K	Y	L	E	S	P	L	L	L	E	P	G	H	R	K	F	D	I	R	S	W	V	L	V	D	N	Q	Y	N	I	Y	L	Y	R	E	G	V	L	R	T	S	S	E	G	N	E	M	F	F	E	E	F	N	Q	Y	L	V	T	S	L	N	I	N	L	E	N	S	I	L	C	Q	I	K	E	I	I	R	V
Template Known Secondary structure							S	S	B			B	T	T	T	T	B												T	T							S																						T	T	S	S	S	S	S		T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		213	.	.	.	.												.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.																	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.																	.
Query Sequence		I	M	Q	E	L	.	.	.	.	.	.	.	.	.	.	.	G	Y	V	G	V	M	A	M	E	C	F	V	T	P	Q	G	.	L	L	I	N	E	L	A	P	R	V	H
Query Conservation							.	.	.	.	.	.	.	.	.	.	.																	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation
Template Sequence		C	L	S	C	L	E	P	A	I	S	T	K	Y	L	P	Y	H	S	F	Q	L	F	G	F	D	F	M	V	D	K	N	L	K	V	W	L	I	E	V	N	G	A	P	A
Template Known Secondary structure					T	T							S	S	S	S	S													B	T	T										S	S
Template Predicted Secondary structure
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions