Job Description P09029 Confidence 100.00% Date Thu Jan 5 11:01:47 GMT 2012 Rank 32 Aligned Residues 265 % Identity 12% Template c3r23B_ PDB info PDB header:ligase Chain: B: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: crystal structure of d-alanine--d-alanine ligase from bacillus2 anthracis Resolution 2.50 Å

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		3	.	.	.	.	.	.	10	.										.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.			.	.	.	.	.	.	50						.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.																																	.	.								.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.																																	.	.								.	.	.	.	.
Query Sequence		Q	V	C	V	L	G	N	G	Q	.	.	.	.	.	.	.	.	.	L	G	R	M	L	R	Q	A	G	E	P	L	G	I	A	V	W	P	V	G	L	D	A	E	P	A	A	V	P	F	Q	Q	.	.	S	V	I	T	A	E	I	.	.	.	.	.	E	R	W	P	E	T	A	L	T	R	E	L	A	R	H	P
Query Conservation											.	.	.	.	.	.	.	.	.																																	.	.								.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.																																	.	.								.	.	.	.	.
Template Conservation
Template Sequence		R	I	G	V	I	X	G	G	V	S	S	E	K	Q	V	S	I	X	T	G	N	E	X	I	A	N	L	D	K	N	K	Y	E	I	V	P	I	T	L	N	E	K	X	D	L	I	E	K	A	K	D	I	D	F	A	L	L	A	L	H	G	K	Y	G	E	D	G	T	V	Q	G	T	L	E	S	L	G	I	P	Y
Template Known Secondary structure										S																		S		T	T	T									S	S	G	G	G					G	G	G		S								S					S	S									T	T			B
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	V	N	R	D	V	F	P	I	I	A	D	R	L	T	Q	K	Q	L	F	D	K	L	H	L	P	T	A	P	W	Q	L	L	A	E	R	S	E	W	P	A	V	F	D	R	L	G	E	L	A	I	V	K	R	R	T	G	G	Y	D	G	R	G	Q	W	R	L	R	A	N	E	T	E	Q	L	P	A	E	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	G	S	N	X	L	S	S	G	I	C	X	D	K	N	I	S	K	K	I	L	R	Y	E	G	I	E	T	P	D	W	I	E	L	T	K	X	E	D	L	N	F	D	E	L	D	K	L	G	F	P	L	V	V	K	P	N	S	G	G	V	K	I	V	Y	D	K	D	E	L	I	S	X	L	E	T	V	F	E	W
Template Known Secondary structure		S	S	S																					T	T											S	S	S								T	T	T		S	S						S									S	T	T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.					.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure																																							.	.	.	.
Query SS confidence																																							.	.	.	.
Query Sequence		Y	G	E	C	I	V	E	Q	G	I	N	F	S	G	E	V	S	L	V	G	A	R	G	F	D	G	S	T	V	F	Y	P	L	T	H	N	L	.	.	.	.	H	Q	D	G	I	L	R	T	S	V	A	F	P	Q	A	N	A	Q	Q	Q	A	Q	A	E	E	M	L	S	A	I	M	Q	E	L	G	Y	V	G	V
Query Conservation																																							.	.	.	.
Alig confidence													.																										.	.	.	.
Template Conservation													.
Template Sequence		D	S	E	V	V	I	E	K	Y	I	K	.	G	E	E	I	T	C	S	I	F	D	G	K	Q	L	P	I	I	S	I	R	H	A	A	E	F	F	D	Y	N	A	K	Y	D	D	A	S	T	I	E	E	V	I	E	L	P	A	E	L	K	E	R	V	N	K	A	S	L	A	C	Y	K	A	L	K	C	S	V	Y
Template Known Secondary structure			S										.	S									T	T																T	T	T	T				S																													T	T			S
Template Predicted Secondary structure													.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.		.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.					.	.	.	250	.	.	.	.	.	.	.				.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.												.	.	.
Query SS confidence																										.	.	.	.												.	.	.
Query Sequence		M	A	M	E	C	F	V	T	P	Q	G	L	L	I	N	E	L	A	P	R	V	H	N	S	.	.	.	.	G	H	W	T	Q	N	G	A	S	I	S	.	.	.	Q	F	E	L	H	L	R	A	I	T	D
Query Conservation																										.	.	.	.												.	.	.
Alig confidence																										.	.	.	.												.	.	.
Template Conservation
Template Sequence		A	R	V	D	X	X	V	K	D	G	I	P	Y	V	X	E	V	N	T	L	P	G	X	T	Q	A	S	L	L	P	K	S	A	D	A	A	G	I	H	Y	S	K	L	L	D	X	I	I	E	T	S	L	R
Template Known Secondary structure										T	T									S	S				S	T	T	S									T	T
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions