Job Description P09029 Confidence 100.00% Date Thu Jan 5 11:01:47 GMT 2012 Rank 31 Aligned Residues 264 % Identity 17% Template c3lwbA_ PDB info PDB header:ligase Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: crystal structure of apo d-alanine:d-alanine ligase (ddl) from2 mycobacterium tuberculosis Resolution 2.10 Å

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		2	.	.	.	.	.	.	.	10	.					.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.																.	.	.	.	.	.	50						.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.
Query SS confidence												.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.
Query Sequence		K	Q	V	C	V	L	G	N	G	Q	.	.	.	.	L	G	R	M	L	R	Q	A	G	E	P	L	G	I	A	V	W	P	V	G	L	D	A	E	P	A	A	V	P	F	Q	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	I	T	A	E	I	.	.	.	.	.	E	R	W	P	E	T	A
Query Conservation												.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.
Alig confidence												.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.
Template Conservation
Template Sequence		V	R	V	A	V	V	F	G	G	A	I	S	C	V	S	A	G	S	I	L	R	N	L	D	S	R	R	F	D	V	I	A	V	G	I	T	P	A	G	S	W	V	L	T	D	A	N	V	S	L	P	P	G	A	G	E	V	L	E	S	V	D	V	V	F	P	V	L	H	G	P	Y	G	E	D	G	T	I	Q	G
Template Known Secondary structure																								S		T	T	T										T	T														T	T							T		S									T	T
Template Predicted Secondary structure
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.			.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure																																															.	.
Query SS confidence																																															.	.
Query Sequence		L	T	R	E	L	A	R	H	P	A	F	V	N	R	D	V	F	P	I	I	A	D	R	L	T	Q	K	Q	L	F	D	K	L	H	L	P	T	A	P	W	Q	L	L	A	E	.	.	R	S	E	W	P	A	V	F	D	R	L	G	E	L	A	I	V	K	R	R	T	G	G	Y	D	G	R	G	Q	W	R	L	R
Query Conservation																																															.	.
Alig confidence																																															.	.																						.
Template Conservation																																																																						.
Template Sequence		L	L	E	L	A	G	V	P	Y	V	G	A	G	V	L	A	S	A	V	G	M	D	K	E	F	T	K	K	L	L	A	A	D	G	L	P	V	G	A	Y	A	V	L	R	P	P	R	S	T	L	H	R	Q	E	C	E	R	L	G	L	P	V	F	V	K	P	A	R	.	G	G	S	S	I	G	V	S	R	V	S
Template Known Secondary structure							T			B	S	S	S										B											T	T			B								T	T														S							S	B	.		S	T	T	T	T
Template Predicted Secondary structure																																																																						.
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.
		136	.	.	.	140	.	.	.	.					.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.																	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure											.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	N	E	T	E	Q	L	P	A	.	.	.	.	E	C	Y	G	E	C	I	V	E	Q	G	I	N	F	S	G	E	V	S	L	V	G	A	R	G	F	D	G	S	T	V	F	Y	P	L	T	H	N	L	H	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	I	L	R	T	S	V	A	F
Query Conservation											.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.														.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.
Template Sequence		S	W	D	Q	L	P	A	A	V	A	R	A	R	R	H	D	P	K	V	I	V	E	A	A	I	S	.	G	R	E	L	E	C	G	V	L	E	M	P	D	G	T	L	E	A	S	T	L	G	E	I	R	V	A	G	V	R	G	R	E	D	S	F	Y	D	F	A	T	K	Y	L	D	D	A	A	E	L	D	V	P
Template Known Secondary structure		S	G	G	G										T	T		S	S									.												T	T	S														S	T	T		S			S	S	S							T		T	T					S	S
Template Predicted Secondary structure																												.
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.					.	.	.	250	.	.	.	.	.	.	.	.	.	260	.				.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.																.	.	.
Query SS confidence																																																					.	.	.	.																.	.	.
Query Sequence		P	Q	A	N	A	Q	Q	Q	A	Q	A	E	E	M	L	S	A	I	M	Q	E	L	G	Y	V	G	V	M	A	M	E	C	F	V	T	P	Q	G	L	L	I	N	E	L	A	P	R	V	H	N	S	.	.	.	.	G	H	W	T	Q	N	G	A	S	I	S	Q	F	E	L	.	.	.	H	L	R	A	I	T
Query Conservation																																																					.	.	.	.																.	.	.
Alig confidence																																																					.	.	.	.																.	.	.
Template Conservation
Template Sequence		A	K	V	D	D	Q	V	A	E	A	I	R	Q	L	A	I	R	A	F	A	A	I	D	C	R	G	L	A	R	V	D	F	F	L	T	D	D	G	P	V	I	N	E	I	N	T	M	P	G	F	T	T	I	S	M	Y	P	R	M	W	A	A	S	G	V	D	Y	P	T	L	L	A	T	M	I	E	T	T	L
Template Known Secondary structure																							T	T			S										T	T									S	S				S	T	T	S									T	T
Template Predicted Secondary structure
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions