Job Description P09029 Confidence 100.00% Date Thu Jan 5 11:01:47 GMT 2012 Rank 33 Aligned Residues 264 % Identity 19% Template c3i12A_ PDB info PDB header:ligase Chain: A: PDB Molecule:d-alanine-d-alanine ligase a; PDBTitle: the crystal structure of the d-alanyl-alanine synthetase a from2 salmonella enterica subsp. enterica serovar typhimurium str. lt2 Resolution 2.20 Å

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		2	.	.	.	.	.	.	.	10	.										.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	Q	V	C	V	L	G	N	G	Q	.	.	.	.	.	.	.	.	.	L	G	R	M	L	R	Q	A	G	E	P	L	G	I	A	V	W	P	V	G	L	D	A	E	P	A	A	V	P	F	Q	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation												.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	R	V	G	I	V	F	G	G	K	S	A	E	H	E	V	S	L	Q	S	A	K	N	I	V	D	A	I	D	K	T	R	F	D	V	V	L	L	G	I	D	K	A	G	Q	W	H	V	N	D	A	E	N	Y	L	Q	N	A	D	D	P	A	H	I	A	L	R	P	S	A	I	S	L	A	Q	V	P	G	K	H
Template Known Secondary structure											S	S	T	T															S		T	T	T										T	T	S							S	S	S	S	B	S	S	T	T		T	T	T			B				S		B					T	T		S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
																		44	.	.	.	.						.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	I	T	A	.	.	.	.	.	E	I	E	R	W	P	E	T	A	L	T	R	E	L	A	R	H	P	A	F	V	N	R	D	V	F	P	I	I	A	D	R	L	T	Q	K	Q	L	F	D	K	L	H	L	P	T	A	P	W	Q	L	L	A	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.
Template Conservation
Template Sequence		Q	H	Q	L	I	N	A	Q	N	G	Q	P	L	P	T	V	D	V	I	F	P	I	V	H	G	T	L	G	E	D	G	S	L	Q	G	M	L	R	V	A	N	L	P	F	V	G	S	D	V	L	S	S	A	A	C	M	D	K	D	V	A	K	R	L	L	R	D	A	G	L	N	I	A	P	F	I	T	L	T	R
Template Known Secondary structure		S	S					T	T	T			B					S								S	T	T	T	T	S	S									T	T			B	S	S																						T	T			B								T
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.				.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.					.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure														.	.	.																																.	.	.	.
Query SS confidence														.	.	.																																.	.	.	.
Query Sequence		R	S	E	W	P	A	V	F	D	R	L	G	.	.	.	E	L	A	I	V	K	R	R	T	G	G	Y	D	G	R	G	Q	W	R	L	R	A	N	E	T	E	Q	L	P	A	E	.	.	.	.	C	Y	G	E	C	I	V	E	Q	G	I	N	F	S	G	E	V	S	L	V	G	A	R	G	F	D	G	S	T	V
Query Conservation														.	.	.																																.	.	.	.
Alig confidence														.	.	.																																.	.	.	.													.
Template Conservation																																																																.
Template Sequence		T	N	R	H	A	F	S	F	A	E	V	E	S	R	L	G	L	P	L	F	V	K	P	A	N	Q	G	S	S	V	G	V	S	K	V	A	N	E	A	Q	Y	Q	Q	A	V	A	L	A	F	E	F	D	H	K	V	V	V	E	Q	G	I	K	.	G	R	E	I	E	C	A	V	L	G	N	D	N	P	Q	A	S
Template Known Secondary structure		T	T	G	G	G												S	S						T	T			T	T	T	T					S	S																S										.	S										S	S	S
Template Predicted Secondary structure																																																																.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.		.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		176	.	.	.	180	.	.	.								.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.																																																			.
Query SS confidence										.	.	.	.	.	.	.																																																			.
Query Sequence		F	Y	P	L	T	H	N	L	.	.	.	.	.	.	.	H	Q	D	G	I	L	R	T	S	V	A	F	P	Q	A	N	A	Q	Q	Q	A	Q	A	E	E	M	L	S	A	I	M	Q	E	L	G	Y	V	G	V	M	A	M	E	C	F	V	T	P	Q	G	.	L	L	I	N	E	L	A	P	R	V	H	N	S	G
Query Conservation										.	.	.	.	.	.	.																																																			.
Alig confidence										.	.	.	.	.	.	.																																																			.
Template Conservation
Template Sequence		T	C	G	E	I	V	L	N	S	E	F	Y	D	T	K	Y	I	D	D	N	G	A	Q	V	V	V	P	A	Q	I	P	S	E	V	N	D	K	I	R	A	I	A	I	Q	A	Y	Q	T	L	G	C	A	G	M	A	R	V	D	V	F	L	T	A	D	N	E	V	V	I	N	E	I	N	T	L	P	G	F	T	N
Template Known Secondary structure										T	T			T	T	T	T	S	G	G	G	G					S	S		S	S																			T	T													T	T										S	S				S	T
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
						248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	H	W	T	Q	N	G	A	S	I	S	Q	F	E	L	H	L	R	A	I
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.
Template Conservation
Template Sequence		I	S	M	Y	P	K	L	W	Q	A	S	G	L	G	Y	T	D	L	I	S	R	L	I
Template Known Secondary structure		T									T	T	T
Template Predicted Secondary structure
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions