Job Description P09029 Confidence 100.00% Date Thu Jan 5 11:01:47 GMT 2012 Rank 44 Aligned Residues 256 % Identity 18% Template c3e5nA_ PDB info PDB header:ligase Chain: A: PDB Molecule:d-alanine-d-alanine ligase a; PDBTitle: crystal strucutre of d-alanine-d-alanine ligase from2 xanthomonas oryzae pv. oryzae kacc10331 Resolution 2.00 Å

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		2	.	.	.	.	.	.	.	10	.										.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	Q	V	C	V	L	G	N	G	Q	.	.	.	.	.	.	.	.	.	L	G	R	M	L	R	Q	A	G	E	P	L	G	I	A	V	W	P	V	G	L	D	A	E	P	A	A	V	P	F	Q	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation												.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	R	V	G	L	I	F	G	G	K	S	A	E	H	E	V	S	L	Q	S	A	R	N	I	L	D	A	L	D	P	Q	R	F	E	P	V	L	I	G	I	D	K	Q	G	Q	W	H	V	N	D	P	D	S	F	L	L	H	A	D	D	P	A	R	I	A	L	H	R	S	G	R	G	V	A	L	L	P	G	A	Q
Template Known Secondary structure											S	S	T	T															S		T	T	T										T	T	S							G	G	G	S			S	T	T		T	T	T														T	T		S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
																44	.	.	.	.	.	50						.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	I	T	A	E	I	.	.	.	.	.	E	R	W	P	E	T	A	L	T	R	E	L	A	R	H	P	A	F	V	N	R	D	V	F	P	I	I	A	D	R	L	T	Q	K	Q	L	F	D	K	L	H	L	P	T	A	P	W	Q	L	L	A	E	R	S
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.
Template Conservation
Template Sequence		Q	Q	Q	L	R	P	I	Q	Q	A	L	A	Q	I	D	V	V	F	P	I	V	H	G	T	L	G	E	D	G	S	L	Q	G	L	L	R	M	A	N	L	P	F	V	G	S	G	V	L	G	S	A	V	A	M	D	K	D	M	A	K	R	V	L	R	D	A	R	L	A	V	A	P	F	V	C	F	D	R	H	T
Template Known Secondary structure		S	S													S								S					S	S									T	T			B	S	S											B											T	T			B
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		105	.				.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140					.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.																																			.	.	.	.
Query SS confidence				.	.	.																																			.	.	.	.
Query Sequence		E	W	.	.	.	P	A	V	F	D	R	L	G	E	L	A	I	V	K	R	R	T	G	G	Y	D	G	R	G	Q	W	R	L	R	A	N	E	T	E	.	.	.	.	Q	L	P	A	E	C	Y	G	E	C	I	V	E	Q	G	I	N	F	S	G	E	V	S	L	V	G	A	R	G	F	D	G	S	T	V	F	Y
Query Conservation				.	.	.																																			.	.	.	.
Alig confidence				.	.	.																																			.	.	.	.																		.
Template Conservation																																																														.
Template Sequence		A	A	H	A	D	V	D	T	L	I	A	Q	L	G	L	P	L	F	V	K	P	A	N	Q	G	S	S	V	G	V	S	Q	V	R	T	A	D	A	F	A	A	A	L	A	L	A	L	A	Y	D	H	K	V	L	V	E	A	A	V	A	.	G	R	E	I	E	C	A	V	L	G	N	A	V	P	H	A	S	V	C
Template Known Secondary structure			T	T												S	S						S	B	S		S	S	T	T						S	G	G	G									T	T	T		S										.	S										S	S	S
Template Predicted Secondary structure																																																														.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.		.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240	.	.	.	.	.	.	.	.					.	250	.	.
Predicted Secondary structure																																																										.																.	.	.	.
Query SS confidence																																																										.																.	.	.	.
Query Sequence		P	L	T	H	N	L	H	Q	D	G	I	L	R	T	S	V	A	F	P	Q	A	N	A	Q	Q	Q	A	Q	A	E	E	M	L	S	A	I	M	Q	E	L	G	Y	V	G	V	M	A	M	E	C	F	V	T	P	Q	G	.	L	L	I	N	E	L	A	P	R	V	H	N	S	G	H	.	.	.	.	W	T	Q	N
Query Conservation																																																										.																.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.																																																.																.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.
Template Sequence		G	.	.	.	.	.	.	.	.	E	V	V	V	E	I	V	I	P	A	D	I	D	A	Q	T	Q	Q	R	I	Q	Q	I	A	V	Q	A	Y	Q	A	L	G	C	A	G	M	A	R	V	D	V	F	L	C	A	D	G	R	I	V	I	N	E	V	N	T	L	P	G	F	T	R	I	S	V	Y	P	K	L	W	Q
Template Known Secondary structure			.	.	.	.	.	.	.	.								S	S		S	S																				T			S										T	T										S	S				S	T	T
Template Predicted Secondary structure			.	.	.	.	.	.	.	.
Template SS confidence
		245									.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	S	I	S	Q	F	E	L	H	L	R	A	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	S	G	L	D	Y	R	G	L	I	T	R	L	I
Template Known Secondary structure		T	T	T
Template Predicted Secondary structure
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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