Job Description P09029 Confidence 100.00% Date Thu Jan 5 11:01:47 GMT 2012 Rank 11 Aligned Residues 351 % Identity 14% Template c3bg5C_ PDB info PDB header:ligase Chain: C: PDB Molecule:pyruvate carboxylase; PDBTitle: crystal structure of staphylococcus aureus pyruvate2 carboxylase Resolution 2.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.			.	.	.	.	40	.	.	.																															.	.	.	.	.
Predicted Secondary structure																																					.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	Q	V	C	V	L	G	N	G	Q	L	G	R	M	L	R	Q	A	G	E	P	L	G	I	A	V	W	P	V	G	L	D	A	E	.	.	P	A	A	V	P	F	Q	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	I	T	A
Query Conservation																																					.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																					.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	K	K	L	L	V	A	N	R	G	E	I	A	I	R	I	F	R	A	A	A	E	L	D	I	S	T	V	A	I	Y	S	N	E	D	K	S	S	L	H	R	Y	K	A	D	E	S	Y	L	V	G	S	D	L	G	P	A	E	S	Y	L	N	I	E	R	I	I	D	V	A	K	Q	A	N	V	D	A	I	H	P
Template Known Secondary structure								S																T	T									S	T	T	T	T		G	G	G	G	S	S	S							S	S			S	S	S	T	T	T											T	T	T
Template Predicted Secondary structure
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
						49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.			.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure		.	.	.	.																																																	.	.
Query SS confidence		.	.	.	.																																																	.	.
Query Sequence		.	.	.	.	E	I	E	R	W	P	E	T	A	L	T	R	E	L	A	R	H	P	A	F	V	N	R	D	V	F	P	I	I	A	D	R	L	T	Q	K	Q	L	F	D	K	L	H	L	P	T	A	P	.	.	W	Q	L	L	A	E	R	S	E	W	P	A	V	F	D	R	L	G	E	L	A	I	V	K	R	R
Query Conservation		.	.	.	.																																																	.	.
Alig confidence		.	.	.	.																																																	.	.
Template Conservation
Template Sequence		G	Y	G	F	L	S	E	N	E	Q	F	A	R	R	C	A	E	E	G	I	K	F	I	G	P	H	L	E	H	L	D	M	F	G	D	K	V	K	A	R	T	T	A	I	K	A	D	L	P	V	I	P	G	T	D	G	P	I	K	S	Y	E	L	A	K	E	F	A	E	E	A	G	F	P	L	M	I	K	A	T
Template Known Secondary structure			S	S	S	S	T	T											T	T				S	S	S									S	S											T	T			B					S	S				T	T									S	S		S							S
Template Predicted Secondary structure
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.											.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.		.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.																																.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.																																.
Query Sequence		T	G	G	Y	D	G	R	G	Q	W	R	L	R	A	N	E	T	E	Q	L	P	A	E	C	.	.	.	.	.	.	.	.	.	.	Y	G	E	C	I	V	E	Q	G	I	N	F	S	G	E	V	S	L	V	G	A	R	G	F	D	G	S	T	V	F	Y	.	P	L	T	H	N	L	H	Q	D	G	I	L	R	T
Query Conservation																										.	.	.	.	.	.	.	.	.	.																																.
Alig confidence			.																							.	.	.	.	.	.	.	.	.	.																																.
Template Conservation			.
Template Sequence		S	.	G	G	G	G	K	G	M	R	I	V	R	E	E	S	E	L	E	D	A	F	H	R	A	K	S	E	A	E	K	S	F	G	N	S	E	V	Y	I	E	R	Y	I	D	N	P	K	H	I	E	V	Q	V	I	G	D	E	H	G	N	I	V	H	L	F	E	R	D	C	S	V	Q	R	R	H	Q	K	V	V
Template Known Secondary structure		S	.				G	G	G						S	T	T	T																S	S											S	S												T	T	S														S	S	S
Template Predicted Secondary structure			.
Template SS confidence
		197		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
		192	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		S	V	A	F	P	.	Q	A	N	A	Q	Q	Q	A	Q	A	E	E	M	L	S	A	I	M	Q	E	L	G	Y	V	G	V	M	A	M	E	C	F	V	T	P	Q	G	L	L	I	N	E	L	A	P	R	V	H	N	S	G	H	W	T	Q	N	G	A	S	I	S	Q	F	E	L	H	L	R	A	I	T	D	L	P
Query Conservation							.
Alig confidence							.
Template Conservation
Template Sequence		E	V	A	P	S	V	G	L	S	P	T	L	R	Q	R	I	C	D	A	A	I	Q	L	M	E	N	I	K	Y	V	N	A	G	T	V	E	F	L	V	S	G	D	E	F	F	F	I	E	V	N	P	R	V	Q	V	E	H	T	I	T	E	M	V	T	G	I	D	I	V	K	T	Q	I	L	V	A	A	G	A	D
Template Known Secondary structure					S		S	S																				T	T													T	T										S			T	T																						T
Template Predicted Secondary structure
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
		271	.	.											.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.													.	.	.	.	.	.	300	.	.	.	.	.					.	.	.	.	310	.			.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.							.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.							.	.
Query Sequence		L	P	Q	.	.	.	.	.	.	.	.	.	.	P	V	V	N	N	P	S	V	M	I	N	L	I	G	S	D	V	N	Y	D	.	.	.	.	.	.	.	.	.	.	.	.	W	L	K	L	P	L	V	H	L	H	W	Y	.	.	.	.	D	K	E	V	R	P	.	.	G	R	K	V	G	H	L	N	L	T	D
Query Conservation					.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.							.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.							.	.
Template Conservation
Template Sequence		L	F	G	E	E	I	N	M	P	Q	Q	K	D	I	T	T	L	G	Y	A	I	Q	C	R	I	T	T	E	D	P	L	N	D	F	M	P	D	T	G	T	I	I	A	Y	R	S	S	G	G	F	G	V	R	L	D	A	G	D	G	F	Q	G	A	E	I	S	P	Y	Y	D	S	L	L	V	K	L	S	T	H	A
Template Known Secondary structure		T	T	S	T	T	T					G	G	G					S									S			T	T	T	T	S								S								T	T						S	S		S	T	T					T	T	S
Template Predicted Secondary structure
Template SS confidence
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.		.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		S	D	T	S	R	L	T	A	T	L	E	A	L	I	P	L	L	P	P	E	.	Y	A	S	G	V	I	W	A	Q	S
Query Conservation																						.
Alig confidence																						.
Template Conservation
Template Sequence		I	S	F	K	Q	A	E	E	K	M	V	R	S	L	R	E	M	R	I	R	G	V	K	T	N	I	P	F	L	I	N
Template Known Secondary structure		S	S																			S	S			S
Template Predicted Secondary structure
Template SS confidence
		434	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.