Job Description P09029 Confidence 100.00% Date Thu Jan 5 11:01:47 GMT 2012 Rank 45 Aligned Residues 262 % Identity 11% Template c2zdqA_ PDB info PDB header:ligase Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: crystal structure of d-alanine:d-alanine ligase with atp2 and d-alanine:d-alanine from thermus thermophius hb8 Resolution 2.30 Å

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		2	.	.	.	.	.	.	.	10	.										.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.																								.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	Q	V	C	V	L	G	N	G	Q	.	.	.	.	.	.	.	.	.	L	G	R	M	L	R	Q	A	G	E	P	L	G	I	A	V	W	P	V	G	L	D	A	E	P	A	A	V	P	F	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	S	V	I	T	A	E
Query Conservation												.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	R	V	L	L	I	A	G	G	V	S	P	E	H	E	V	S	L	L	S	A	E	G	V	L	R	H	I	P	F	P	T	D	L	A	V	I	A	Q	D	G	R	W	L	L	G	E	K	A	L	T	A	L	E	A	K	A	A	P	E	G	E	H	P	F	P	P	P	L	S	W	E	R	Y	D	V	V	F	P	L
Template Known Secondary structure											S	S	T	T																S	S									T	T	S					T									T	S						S	B		S	S					G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		50	.						.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure				.	.	.	.	.
Query SS confidence				.	.	.	.	.
Query Sequence		I	E	.	.	.	.	.	R	W	P	E	T	A	L	T	R	E	L	A	R	H	P	A	F	V	N	R	D	V	F	P	I	I	A	D	R	L	T	Q	K	Q	L	F	D	K	L	H	L	P	T	A	P	W	Q	L	L	A	E	R	S	E	W	P	A	V	F	D	R	L	G	E	L	A	I	V	K	R	R	T	G
Query Conservation				.	.	.	.	.
Alig confidence				.	.	.	.	.																																																										.	.	.	.
Template Conservation																																																																		.	.	.	.
Template Sequence		L	H	G	R	F	G	E	D	G	T	V	Q	G	F	L	E	L	L	G	K	P	Y	V	G	A	G	V	A	A	S	A	L	C	M	D	K	D	L	S	K	R	V	L	A	Q	A	G	V	P	V	V	P	W	V	A	V	R	K	G	E	P	P	V	V	.	.	.	.	P	F	D	P	P	F	F	V	K	P	A	N
Template Known Secondary structure				S	T	T	T	T	S	S										T			B	S	S																						T	T											T	T	S					.	.	.	.		S		S							T	T
Template Predicted Secondary structure																																																																		.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.					.	.	.	.	.	150	.	.	.	.	.	.
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.					.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.									190	.	.
Predicted Secondary structure																					.	.	.	.																																															.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.																																															.	.	.	.	.	.	.	.
Query Sequence		G	Y	D	G	R	G	Q	W	R	L	R	A	N	E	T	E	Q	L	P	.	.	.	.	A	E	C	Y	G	E	C	I	V	E	Q	G	I	N	F	S	G	E	V	S	L	V	G	A	R	G	F	D	G	S	T	V	F	Y	P	L	T	H	N	L	H	Q	D	G	I	L	.	.	.	.	.	.	.	.	R	T	S
Query Conservation																					.	.	.	.																																															.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.																																															.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	G	S	S	V	G	I	S	R	V	E	R	F	Q	D	L	E	A	A	L	A	L	A	F	R	Y	D	E	K	A	V	V	E	K	A	L	S	P	V	R	E	L	E	V	G	V	L	G	N	V	F	G	E	A	S	P	V	G	E	V	R	Y	E	A	P	F	Y	D	Y	E	T	K	Y	T	P	G	R	A	E	L
Template Known Secondary structure				T	T	T	T						S	G	G	G									T	T	T		S									S	S										S	S	S	S												S	S	S	S	S							S	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.					.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.				.	.	.	.
Predicted Secondary structure																																																						.	.	.	.																		.	.	.
Query SS confidence																																																						.	.	.	.																		.	.	.
Query Sequence		V	A	F	P	Q	A	N	A	Q	Q	Q	A	Q	A	E	E	M	L	S	A	I	M	Q	E	L	G	Y	V	G	V	M	A	M	E	C	F	V	T	P	Q	G	L	L	I	N	E	L	A	P	R	V	H	.	.	.	.	N	S	G	H	W	T	Q	N	G	A	S	I	S	Q	F	E	L	.	.	.	H	L	R	A
Query Conservation																																																						.	.	.	.																		.	.	.
Alig confidence																																																						.	.	.	.																		.	.	.
Template Conservation
Template Sequence		L	I	P	A	P	L	D	P	G	T	Q	E	T	V	Q	E	L	A	L	K	A	Y	K	V	L	G	V	R	G	M	A	R	V	D	F	F	L	A	E	G	E	L	Y	L	N	E	L	N	T	I	P	G	F	T	P	T	S	M	Y	P	R	L	F	E	A	G	G	V	A	Y	P	E	L	L	R	R	L	V	E	L
Template Known Secondary structure			S	S																							T			S										T	T									S	S				S	T	T		S							T	T	T
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		266	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L
Template Known Secondary structure			T
Template Predicted Secondary structure
Template SS confidence
		317	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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