Job Description P09029 Confidence 100.00% Date Thu Jan 5 11:01:47 GMT 2012 Rank 16 Aligned Residues 342 % Identity 14% Template c2yyaB_ PDB info PDB header:ligase Chain: B: PDB Molecule:phosphoribosylamine--glycine ligase; PDBTitle: crystal structure of gar synthetase from aquifex aeolicus Resolution 2.40 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.			.	.	.	.	.	.	.	30	.	.	.	.	.	.	.																				.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Query SS confidence																							.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Query Sequence		K	Q	V	C	V	L	G	N	G	Q	L	G	R	M	L	R	Q	A	G	E	P	.	.	L	G	I	A	V	W	P	V	G	L	D	A	E	P	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	V	P	F	Q	Q	S	V	I	T	A	E	I	E	R	W	P	E	T	A	L	T	.
Query Conservation																							.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Alig confidence																							.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Template Conservation
Template Sequence		M	K	V	L	V	V	G	N	G	G	R	E	H	A	I	A	W	K	V	A	Q	S	P	L	V	K	E	L	Y	V	A	K	G	N	A	G	I	W	E	I	A	K	R	V	D	I	S	P	T	D	V	E	K	L	A	E	F	A	K	N	E	G	V	D	F	T	I	V	G	P	E	A	P	L	V	E	G	I	V	D
Template Known Secondary structure										S											T	T	S	T	T		S						S			T	T	G	G	G	T	S					S		T	T													T		S						S	S					T	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
				60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	R	E	L	A	R	H	P	A	F	V	N	R	D	V	F	P	I	I	A	D	R	L	T	Q	K	Q	L	F	D	K	L	H	L	P	T	A	P	W	Q	L	L	A	E	R	S	E	W	P	A	V	F	D	R	L	G	E	L	A	I	V	K	R	R	T	G	G	Y	D	G	R	G	Q	W	R	L	R	A	N
Query Conservation		.	.
Alig confidence		.	.																																																																	.
Template Conservation																																																																				.
Template Sequence		E	F	E	K	R	G	L	K	I	F	G	P	N	K	E	A	A	K	L	E	G	S	K	A	F	A	K	T	F	M	K	K	Y	G	I	P	T	A	R	Y	E	V	F	T	D	F	E	K	A	K	E	Y	V	E	K	V	G	A	P	I	V	V	K	A	D	G	.	L	A	A	G	K	G	A	V	V	C	E	T	V
Template Known Secondary structure						T	T					S			T	T	T	T																	T			B							S										T	T	T		S	S						S	S	.		S	T	T								S
Template Predicted Secondary structure																																																																				.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.	.	.	.	.	.
		138	.	140	.	.	.	.	.											.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.														.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	T	E	Q	L	P	A	E	.	.	.	.	.	.	.	.	.	.	C	Y	G	E	C	I	V	E	Q	G	I	N	F	S	G	E	V	S	L	V	G	A	R	G	F	D	G	S	T	V	F	Y	P	L	T	H	N	L	H	Q	D	G	I	L	R	T	S	V	.	.	.	.	.	.	.	.	.	.	.	.	.	A
Query Conservation										.	.	.	.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.															.											.																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.											.
Template Sequence		E	K	A	I	E	T	L	D	R	F	L	N	K	K	I	F	G	K	S	S	E	R	V	V	I	E	E	F	L	E	G	E	.	E	A	S	Y	I	V	M	I	N	G	.	D	R	Y	V	P	L	P	T	S	Q	D	H	K	R	L	L	D	E	D	K	G	P	N	T	G	G	M	G	A	Y	S	P	T	P	V	I
Template Known Secondary structure													T	S			S	T	T	T	S	S	S											.										T	.	T								B								T	T	T						S		S					S		T	T	S
Template Predicted Secondary structure																																		.											.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.			.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.		.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure																										.	.																															.
Query SS confidence																										.	.																															.
Query Sequence		F	P	Q	A	N	A	Q	Q	Q	A	Q	A	E	E	M	L	S	A	I	M	Q	E	L	G	.	.	Y	V	G	V	M	A	M	E	C	F	V	T	P	Q	G	L	L	I	N	E	L	A	P	R	V	H	N	S	G	H	.	W	T	Q	N	G	A	S	I	S	Q	F	E	L	H	L	R	A	I	T	D	L	P	L
Query Conservation																										.	.																															.
Alig confidence																										.	.																															.
Template Conservation
Template Sequence		N	E	E	V	E	K	R	I	R	E	E	I	V	E	R	V	I	K	G	L	K	E	E	G	I	Y	Y	R	G	F	L	Y	A	G	L	M	I	T	K	E	G	P	K	V	L	E	F	N	V	R	L	G	D	P	E	A	Q	P	I	L	M	R	V	K	N	D	F	L	E	T	L	L	N	F	Y	E	G	K	D	V
Template Known Secondary structure													T											T	T															T	T									S	S			T	T	T							T	B		S												T
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.													.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.							.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Query Sequence		P	Q	P	V	V	N	N	P	S	V	M	I	N	L	I	G	S	.	.	.	.	.	.	.	.	.	.	.	.	D	V	N	Y	D	W	L	K	L	P	L	V	H	L	H	W	Y	.	.	.	.	.	.	D	K	E	V	R	P	G	R	K	V	G	H	L	N	L	T	D	S	D	T	S	R	L	T	A	T	L	E
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Template Conservation
Template Sequence		H	I	K	E	D	E	R	Y	A	L	D	V	V	L	A	S	R	G	Y	P	E	K	P	E	T	G	K	I	I	H	G	L	D	Y	L	K	S	M	E	D	V	V	V	F	H	A	G	T	K	K	E	G	N	F	T	V	T	S	G	G	R	V	L	N	V	C	A	Y	G	K	T	L	K	E	A	K	E	R	A	Y
Template Known Secondary structure					B		S	S										T	T	T	T	T	S						B		B		T	T	T	G	G	G	S	T	T						S	S					T	T						S	S										S	S
Template Predicted Secondary structure
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	I	P	L	L	P	P	E	Y	A	S	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	A	I	R	Y	V	C	F	E	G	M	H	Y
Template Known Secondary structure					T	T		B		T	T		B
Template Predicted Secondary structure
Template SS confidence
		398	.	400	.	.	.	.	.	.	.	.	.	410

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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