Job Description P09029 Confidence 100.00% Date Thu Jan 5 11:01:47 GMT 2012 Rank 27 Aligned Residues 339 % Identity 14% Template c2ys6A_ PDB info PDB header:ligase Chain: A: PDB Molecule:phosphoribosylglycinamide synthetase; PDBTitle: crystal structure of gar synthetase from geobacillus kaustophilus Resolution 2.21 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.			.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.																				.	.	.	.	.	.	50	.	.	.	.				.	.	.
Predicted Secondary structure																									.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.
Query SS confidence																									.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.
Query Sequence		K	Q	V	C	V	L	G	N	G	Q	L	G	R	M	L	R	Q	A	G	E	P	L	G	.	.	I	A	V	W	P	V	G	L	D	A	E	P	A	A	V	P	F	Q	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	I	T	A	E	I	E	R	W	P	.	.	.	E	T	A
Query Conservation																									.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.
Alig confidence																									.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.
Template Conservation
Template Sequence		M	N	V	L	V	I	G	R	G	G	R	E	H	A	I	A	W	K	A	A	Q	S	P	L	V	G	K	L	Y	V	A	P	G	N	P	G	I	A	D	V	A	E	L	V	H	I	D	E	L	D	I	E	A	L	V	Q	F	A	K	Q	Q	A	I	D	L	T	I	V	G	P	E	A	P	L	A	S	G	I	V	D
Template Known Secondary structure									S	S											T	T		T	T											T	T	G	G	G	T	S							T	T												T	T								S						T	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	R	E	L	A	R	H	P	A	F	V	N	R	D	V	F	P	I	I	A	D	R	L	T	Q	K	Q	L	F	D	K	L	H	L	P	T	A	P	W	Q	L	L	A	E	R	S	E	W	P	A	V	F	D	R	L	G	E	L	A	I	V	K	R	R	T	G	G	Y	D	G	R	G	Q	W	R	L	R	A	N
Query Conservation
Alig confidence																																																																		.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.
Template Sequence		R	F	M	A	E	G	L	R	I	F	G	P	S	Q	R	A	A	L	I	E	G	S	K	A	F	A	K	E	L	M	K	K	Y	G	I	P	T	A	D	H	A	A	F	T	S	Y	E	E	A	K	A	Y	I	E	Q	K	G	A	P	I	V	I	K	A	.	.	.	.	.	D	G	K	G	V	T	V	A	Q	T	V
Template Known Secondary structure						T	T					S																							T			B							S														S	S						.	.	.	.	.									S	S
Template Predicted Secondary structure																																																																		.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.						.	.	.	.	.	150	.	.	.	.	.
		138	.	140	.	.	.	.	.	.											.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.														.	.	.	.	190	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	T	E	Q	L	P	A	E	C	.	.	.	.	.	.	.	.	.	.	Y	G	E	C	I	V	E	Q	G	I	N	F	S	G	E	V	S	L	V	G	A	R	G	F	D	G	S	T	V	F	Y	P	L	T	H	N	L	H	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	I	L	R	T	S	V	A
Query Conservation											.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.												.													.															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.													.
Template Sequence		E	E	A	L	A	A	A	K	A	A	L	V	D	G	Q	F	G	T	A	G	S	Q	V	V	I	E	E	Y	L	E	.	G	E	E	F	S	F	M	A	F	V	N	G	.	E	K	V	Y	P	L	A	I	A	Q	D	H	K	R	A	Y	D	G	D	E	G	P	N	T	G	G	M	G	A	Y	S	P	V	P	Q	I
Template Known Secondary structure															S			B	T	T	B											.	S											T	.	T								B								T	T	T						S		S							T	T	S
Template Predicted Secondary structure																																.													.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.		190	.	.	.	.	.	.	.	.	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.			.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure																										.	.																																.
Query SS confidence																										.	.																																.
Query Sequence		F	P	Q	A	N	A	Q	Q	Q	A	Q	A	E	E	M	L	S	A	I	M	Q	E	L	G	.	.	Y	V	G	V	M	A	M	E	C	F	V	T	P	Q	G	L	L	I	N	E	L	A	P	R	V	H	N	S	G	H	W	.	T	Q	N	G	A	S	I	S	Q	F	E	L	H	L	R	A	I	T	D	L	P	L
Query Conservation																										.	.																																.
Alig confidence																										.	.																																.
Template Conservation
Template Sequence		S	D	E	M	M	D	A	A	L	E	A	I	L	R	P	A	A	K	A	L	A	A	E	G	R	P	F	L	G	V	L	Y	A	G	L	M	A	T	A	N	G	P	K	V	I	E	F	N	A	R	F	G	D	P	E	A	Q	V	V	L	P	R	L	K	T	D	L	V	E	A	V	L	A	V	M	D	G	K	E	L
Template Known Secondary structure													T											T	T															T	T									S	S			T	T						G	G	G	B		S											T	T
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.													.	.	290	.	.	.	.	.	.	.	.	.	300	.					.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Query Sequence		P	Q	P	V	V	N	N	P	S	V	M	I	N	L	I	G	.	.	.	.	.	.	.	.	.	.	.	.	S	D	V	N	Y	D	W	L	K	L	P	L	V	H	.	.	.	.	L	H	W	Y	D	K	E	V	R	P	G	R	K	V	G	H	L	N	L	T	D	S	D	T	S	R	L	T	A	T	L	E	A	L
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template Conservation
Template Sequence		E	L	E	W	T	D	E	A	V	L	G	V	V	L	A	A	K	G	Y	P	G	A	Y	E	R	G	A	E	I	R	G	L	D	R	I	S	P	D	A	L	L	F	H	A	G	T	K	R	E	G	G	A	W	Y	T	N	G	G	R	V	L	L	L	A	A	K	G	E	T	L	A	K	A	K	E	K	A	Y	E	Q
Template Known Secondary structure					B		S	S										T	T	T	T	S	S								B		G	G	G	S		T	T	S					S	S					T	T						S	S										S	S
Template Predicted Secondary structure
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
		336	.	.	.	340	.	.				.	.	.	.	.
Predicted Secondary structure									.	.	.
Query SS confidence									.	.	.
Query Sequence		I	P	L	L	P	P	E	.	.	.	Y	A	S	G	V
Query Conservation									.	.	.
Alig confidence									.	.	.
Template Conservation
Template Sequence		L	A	A	I	D	C	D	G	L	F	Y	R	R	D	I
Template Known Secondary structure			T	T		B		T	T					S		T
Template Predicted Secondary structure
Template SS confidence
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions