Return to main results Retrieve Phyre Job Id

Job DescriptionP09029
Confidence100.00%DateThu Jan 5 11:01:47 GMT 2012
Rank20Aligned Residues343
% Identity15%Templatec2xd4A_
PDB info PDB header:ligaseChain: A: PDB Molecule:phosphoribosylamine--glycine ligase; PDBTitle: nucleotide-bound structures of bacillus subtilis glycinamide2 ribonucleotide synthetase
Resolution2.65 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.. .......30....... ..40.........50.... ...
Predicted Secondary structure 



..







...................








...
Query SS confidence 




















. .














. . . . . . . . . . . . . . . . . . .
















. . .


Query Sequence  KQVCVLGNGQLGRMLRQAGEP. . LGIAVWPVGLDAEPA. . . . . . . . . . . . . . . . . . . AVPFQQSVITAEIERWP. . . ETA
Query Conservation 
 




 
   
 

 

  .. 
  
  

      ...................    
 


    
   ...  
Alig confidence 




















..














...................
















...


Template Conservation 






 
 
  
    
        
     

              
   
  

     
 
    
      
  
Template Sequence  MNVLIIGKGGREHTLAWKAAQSSLVENVFAAPGNDGMAASAQLVNIEESDHAGLVSFAKQNQVGLTIVGPEVPLIEGLVD
Template Known Secondary structure 
SST
TT
S

GGGTTT




TT
TT
STT
Template Predicted Secondary structure 



























Template SS confidence 















































































   1........10.........20.........30.........40.........50.........60.........70.........80
 
   58.60.........70.........80.........90.........100.........110.........120.........130.......
Predicted Secondary structure 































Query SS confidence 















































































Query Sequence  LTRELARHPAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLAERSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRAN
Query Conservation            
 
        

   
  
   


 
                      



     
   
      
Alig confidence 

































































.












Template Conservation   

  

   
    
     

   
  
   


 
      
  
        
 
 



  .
 

 

  
   
Template Sequence  EFEKAGLHVFGPSKAAAIIEGSKQFAKDLMKKYDIPTAEYETFTSFDEAKAYVQEKGAPIVIKADG. LAAGKGVTVAMTE
Template Known Secondary structure  TT

S

TTTT
TT

B

S

SSSS.
GGG

SS
Template Predicted Secondary structure 






























.








Template SS confidence 















































































   81........90.........100.........110.........120.........130.........140...... ...150.........
 
   138.140...... ...150.........160.........170.........180.........190... .
Predicted Secondary structure 


..........















.............
Query SS confidence 








. . . . . . . . . .














































. . . . . . . . . . . . .
Query Sequence  ETEQLPAEC. . . . . . . . . . YGECIVEQGINFSGEVSLVGARGFDGSTVFYPLTHNLHQDGILRTSV. . . . . . . . . . . . . A
Query Conservation    
      ..........    



 
 
  
  
       
                     ............. 
Alig confidence 








..........












.









.





















.............
Template Conservation   

  
                 



 
 
 .
 

    

.                               
    
Template Sequence  EEAIACLHDFLEDEKFGDASASVVIEEYLSGE. EFSLMAFVKG. EKVYPMVIAQDHKRAFDGDKGPNTGGMGAYSPVPQI
Template Known Secondary structure  TTS
TTTTTTSS


S.T.T


B

TTT
S
SS
TTS
Template Predicted Secondary structure 








.
.
















Template SS confidence 















































































   160.........170.........180.........190. ........200. ........210.........220.........230.......
 
   195....200.........210......... 220.........230.........240......... 250.........260.........270.
Predicted Secondary structure 







..









.








Query SS confidence 
























. .





























.





















Query Sequence  FPQANAQQQAQAEEMLSAIMQELGY. . VGVMAMECFVTPQGLLINELAPRVHNSGHW. TQNGASISQFELHLRAITDLPL
Query Conservation 
  
       
     

  


 .. 
   


     
  






       .     
       
    
 
 
Alig confidence 
























..





























.





















Template Conservation             
      

 
 

   
   

   
     




 
 
             
     
    
   
Template Sequence  SEETVRHAVETIVKPAAKAMVQEGRSFTGVLYAGLMLTENGSKVIEFNARFGDPETQVVLPRMESDLVQVLLDLLDDKEV
Template Known Secondary structure 
TTTT


TTSS

TTGGGB
S
TT


Template Predicted Secondary structure 























Template SS confidence 















































































   238.240.........250.........260.........270.........280.........290.........300.........310.......
 
   272.......280........ .290.........300.........310... ......320.........330.....
Predicted Secondary structure 









..........















......

Query SS confidence 
















. . . . . . . . . .
























. . . . . .





















Query Sequence  PQPVVNNPSVMINLIGS. . . . . . . . . . DVNYDWLKLPLVHLHWYDKEVRPGR. . . . . . KVGHLNLTDSDTSRLTATLEAL
Query Conservation                   ..........                         ...... 

 
   
    
        
Alig confidence 
















..........
























......





















Template Conservation                              
           
         
       


 

  
 
  

   
  
Template Sequence  DLRWKDTAAVSVVLASEGYPESYAKGTPIGSLAAETEQVVVFHAGTKAEGGEFVTNGGRVANVTAFDETFEAARDRVYKA
Template Known Secondary structure 


B
S
TTTTSS








SSSSSS
SSS
SSSS
Template Predicted Secondary structure 



































Template SS confidence 















































































   318.320.........330.........340.........350.........360.........370.........380.........390.......
 
   336...340.. .....
Predicted Secondary structure 

...


Query SS confidence 






. . .




Query Sequence  IPLLPPE. . . YASGV
Query Conservation     
   ...     
Alig confidence 






...




Template Conservation     
   
   
 

Template Sequence  VDEIFKPGLFFRKDI
Template Known Secondary structure 

TT

S
T
Template Predicted Secondary structure 








Template SS confidence 














   398.400.........410..
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions