Job Description P09029 Confidence 100.00% Date Thu Jan 5 11:01:47 GMT 2012 Rank 14 Aligned Residues 347 % Identity 13% Template c2vpqA_ PDB info PDB header:ligase Chain: A: PDB Molecule:acetyl-coa carboxylase; PDBTitle: crystal structure of biotin carboxylase from s. aureus2 complexed with amppnp Resolution 2.1 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30			.	.	.	.	.	.	.	.	.	40	.	.	.																														.	.	.	.	.
Predicted Secondary structure																															.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.
Query SS confidence																															.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.
Query Sequence		K	Q	V	C	V	L	G	N	G	Q	L	G	R	M	L	R	Q	A	G	E	P	L	G	I	A	V	W	P	V	.	.	G	L	D	A	E	P	A	A	V	P	F	Q	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	I	T	A	.	.
Query Conservation																															.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.
Alig confidence																															.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.
Template Conservation
Template Sequence		K	K	V	L	I	A	N	R	G	E	I	A	V	R	I	I	R	A	C	R	D	L	G	I	Q	T	V	A	I	Y	S	E	G	D	K	D	A	L	H	T	Q	I	A	D	E	A	Y	C	V	G	P	T	L	S	K	D	S	Y	L	N	I	P	N	I	L	S	I	A	T	S	T	G	C	D	G	V	H	P	G	Y
Template Known Secondary structure																							T	T									G	G	G	T	T							S	S								S	S	G	G	G	T	T	T												T	T		S						S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
				49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.			.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure		.	.																																																			.	.
Query SS confidence		.	.																																																			.	.
Query Sequence		.	.	E	I	E	R	W	P	E	T	A	L	T	R	E	L	A	R	H	P	A	F	V	N	R	D	V	F	P	I	I	A	D	R	L	T	Q	K	Q	L	F	D	K	L	H	L	P	T	A	P	W	Q	.	.	L	L	A	E	R	S	E	W	P	A	V	F	D	R	L	G	E	L	A	I	V	K	R	R	T	G
Query Conservation		.	.																																																			.	.
Alig confidence		.	.																																																			.	.																										.
Template Conservation																																																																																	.
Template Sequence		G	F	L	A	E	N	A	D	F	A	E	L	C	E	A	C	Q	L	K	F	I	G	P	S	Y	Q	S	I	Q	K	M	G	I	K	D	V	A	K	A	E	M	I	K	A	N	V	P	V	V	P	G	S	D	G	L	M	K	D	V	S	E	A	K	K	I	A	K	K	I	G	Y	P	V	I	I	K	A	T	A	.
Template Known Secondary structure		S	T	T	T	T										T	T	T				S	S	S										S											T	T			B		S	B		S	S		B	S														S	S						T	T	.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.											.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.		.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.																																						.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.																																						.
Query Sequence		G	Y	D	G	R	G	Q	W	R	L	R	A	N	E	T	E	Q	L	P	A	E	C	.	.	.	.	.	.	.	.	.	.	Y	G	E	C	I	V	E	Q	G	I	N	F	S	G	E	V	S	L	V	G	A	R	G	F	D	G	S	T	V	F	Y	P	L	T	H	N	L	.	H	Q	D	G	I	L	R	T	S	V
Query Conservation																								.	.	.	.	.	.	.	.	.	.																																						.
Alig confidence																								.	.	.	.	.	.	.	.	.	.																																						.
Template Conservation
Template Sequence		G	G	G	G	K	G	I	R	V	A	R	D	E	K	E	L	E	T	G	F	R	M	T	E	Q	E	A	Q	T	A	F	G	N	G	G	L	Y	M	E	K	F	I	E	N	F	R	H	I	E	I	Q	I	V	G	D	S	Y	G	N	V	I	H	L	G	E	R	D	C	T	I	Q	R	R	M	Q	K	L	V	E	E
Template Known Secondary structure				T	T		S					S	S																				S												S												T	T	S															T	T
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		194	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.			230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure					.																																		.	.
Query SS confidence					.																																		.	.
Query Sequence		A	F	P	.	Q	A	N	A	Q	Q	Q	A	Q	A	E	E	M	L	S	A	I	M	Q	E	L	G	Y	V	G	V	M	A	M	E	C	F	V	.	.	T	P	Q	G	L	L	I	N	E	L	A	P	R	V	H	N	S	G	H	W	T	Q	N	G	A	S	I	S	Q	F	E	L	H	L	R	A	I	T	D	L	P
Query Conservation					.																																		.	.
Alig confidence					.																																		.	.
Template Conservation
Template Sequence		A	P	S	P	I	L	D	D	E	T	R	R	E	M	G	N	A	A	V	R	A	A	K	A	V	N	Y	E	N	A	G	T	I	E	F	I	Y	D	L	N	D	N	K	F	Y	F	M	E	M	N	T	R	I	Q	V	E	H	P	V	T	E	M	V	T	G	I	D	L	V	K	L	Q	L	Q	V	A	M	G	D	V
Template Known Secondary structure			S		T	T																				T	T													T	T	T	T										S			T	T																					T	T
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		271	.					.	.	.	.	.	.	.	280	.	.	.	.	.										.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.									.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.														.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.														.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Query Sequence		L	P	.	.	.	.	Q	P	V	V	N	N	P	S	V	M	I	N	L	.	.	.	.	.	.	.	.	.	I	G	S	D	V	N	Y	D	W	L	K	L	P	L	V	H	L	H	W	Y	D	K	E	V	R	P	G	R	.	.	.	.	.	.	.	.	K	V	G	H	L	N	L	T	D	S	D	T	S	R	L	T
Query Conservation				.	.	.	.														.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.														.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	P	Y	K	Q	E	D	I	K	L	T	G	H	A	I	E	F	R	I	N	A	E	N	P	Y	K	N	F	M	P	S	P	G	K	I	E	Q	Y	L	A	P	G	G	Y	G	V	R	I	E	S	A	C	Y	T	N	Y	T	I	P	P	Y	Y	D	S	M	V	A	K	L	I	I	H	E	P	T	R	D	E	A	I
Template Known Secondary structure			S			G	G	G					S									S			G	G	G	T	T					S	B		S							S	T	T									T	T		B			T	T	T												S	S
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
		330	.	.	.	.	.	.	.	.	.	340	.	.		.	.	.	.	.	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		A	T	L	E	A	L	I	P	L	L	P	P	E	.	Y	A	S	G	V	I	W
Query Conservation															.
Alig confidence															.
Template Conservation
Template Sequence		M	A	G	I	R	A	L	S	E	F	V	V	L	G	I	D	T	T	I	P	F
Template Known Secondary structure										T					S	S			S
Template Predicted Secondary structure
Template SS confidence
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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