Job Description P09029 Confidence 100.00% Date Thu Jan 5 11:01:47 GMT 2012 Rank 46 Aligned Residues 247 % Identity 12% Template c2pn1A_ PDB info PDB header:ligase Chain: A: PDB Molecule:carbamoylphosphate synthase large subunit; PDBTitle: crystal structure of carbamoylphosphate synthase large subunit (split2 gene in mj) (zp_00538348.1) from exiguobacterium sp. 255-15 at 2.00 a3 resolution Resolution 2.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.			.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.
Predicted Secondary structure																										.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	Q	V	C	V	L	G	N	G	Q	L	G	R	M	L	R	Q	A	G	E	P	L	G	.	.	I	A	V	W	P	V	G	L	D	A	E	P	A	A	V	P	F	Q	Q	S	V	I	T	A	E	I	E	R	W	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																										.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.											.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.
Template Sequence		K	P	H	L	L	I	T	S	A	G	R	R	A	.	K	L	V	E	Y	F	V	K	E	F	K	T	G	R	V	S	T	A	D	C	S	P	L	A	S	A	L	Y	X	A	D	Q	H	Y	I	V	P	K	I	D	E	V	E	Y	I	D	H	L	L	T	L	C	Q	D	E	G	V	T	A	L	L	T	L	I	D	P
Template Known Secondary structure									S		T	T			.												S	S							S		T	T		G	G	G	G	G	S	S	S							T	T	S	T	T													T							S	S
Template Predicted Secondary structure															.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.		.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
									55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	E	T	A	L	T	R	E	L	A	R	H	P	A	F	V	N	R	D	V	F	P	I	I	A	D	R	L	T	Q	K	Q	L	F	D	K	L	H	L	P	T	A	P	W	Q	L	L	A	E	R	S	E	W	P	A	V	F	D	R	L	G	E	L	A	I	V	K	R	R	T	G	G	Y	D
Query Conservation		.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																																																																				.	.	.	.	.	.
Template Conservation																																																																												.	.	.	.	.	.
Template Sequence		E	L	G	L	L	A	Q	A	T	E	R	F	Q	A	I	G	V	T	V	I	V	S	P	Y	A	A	C	E	L	C	F	D	K	Y	T	X	Y	E	Y	C	L	R	Q	G	I	A	H	A	R	T	Y	A	T	X	A	S	F	E	E	A	L	A	A	G	E	V	Q	L	P	V	F	V	K	P	.	.	.	.	.	.
Template Known Secondary structure									T						T	T	T																B												T								S	S										T	T	S	S		S							.	.	.	.	.	.
Template Predicted Secondary structure																																																																												.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	G	Q	W	R	L	R	A	N	E	T	E	Q	L	P	A	E	C	Y	G	E	C	I	V	E	Q	G	I	N	F	S	G	E	V	S	L	V	G	A	R	G	F	D	G	S	T	V	F	Y	P	L	T	H	N	L	H	Q	D	G	I	L	R	T	S	V	A	F	P	Q	A	N	A	Q	Q	Q	A	Q	A	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.																																								.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.																																								.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	N	G	D	L	I	V	Q	E	L	L	V	G	Q	.	E	L	G	V	D	A	Y	V	D	L	I	S	G	K	V	T	S	I	F	I	K	E	K	L	T	X	R	A	G	E	T	D	K	S	R	S	V	L	R	.	.	.	.	D	D	V	F
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	B											S		.										T	T	T																T	T											.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.																																								.	.	.	.
Template SS confidence
																				156	.	.	.	160	.	.	.	.	.	.	.	.	.		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.					.	210	.	.
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	M	L	S	A	I	M	Q	E	L	G	Y	V	G	V	M	A	M	E	C	F	V	T	P	Q	G	L	L	I	N	E	L	A	P	R	V	H	N	S	G	H	W	T	Q	N	G	A	S	I	S	Q	F	E	L	H	L	R	A	I	T	D	L	P	L	P	Q	P	V	V	N	N
Query Conservation
Alig confidence																																														.
Template Conservation																																														.
Template Sequence		E	L	V	E	H	V	L	D	G	S	G	L	V	G	P	L	D	F	D	L	F	D	V	A	G	T	L	Y	L	S	E	I	N	P	R	F	G	G	G	Y	P	H	A	Y	.	E	C	G	V	N	F	P	A	Q	L	Y	R	N	L	X	H	E	I	N	V	P	Q	I	G	Q	Y
Template Known Secondary structure									T	T	T														T	T									S	S			T	T						.		T	T												T	T							T	T		S
Template Predicted Secondary structure																																														.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions