Job Description P09029 Confidence 99.15% Date Thu Jan 5 11:01:47 GMT 2012 Rank 78 Aligned Residues 214 % Identity 13% Template c2pbzC_ PDB info PDB header:ligase Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of an imp biosynthesis protein purp from2 thermococcus kodakaraensis Resolution 2.50 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.				.	.	40	.	.	.	.	.	.	.	.	.	50	.	.																			.	.	.	.	.	.	.	60	.	.
Predicted Secondary structure																																				.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	C	V	L	G	N	G	Q	L	G	R	M	L	R	Q	A	G	E	P	L	G	I	A	V	W	P	V	G	L	D	A	E	P	A	.	.	.	A	V	P	F	Q	Q	S	V	I	T	A	E	I	E	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	P	E	T	A	L	T	R	E	L
Query Conservation																																				.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.																												.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation								.																																																																									.
Template Sequence		V	S	T	I	A	S	.	H	S	S	L	Q	I	L	L	G	A	K	K	E	G	F	K	T	R	L	Y	V	S	P	K	R	R	P	F	Y	S	S	L	P	I	V	D	D	L	V	V	A	E	E	X	T	S	I	L	N	D	D	G	I	V	V	P	H	G	S	F	V	A	Y	L	G	I	E	A	I	E	K	A	.
Template Known Secondary structure						S	S	.	T	T											T	T									T	T	T						T		T	T		S						S		S			T	T			S	S	B				B	T	T					S							T		.
Template Predicted Secondary structure								.																																																																									.
Template SS confidence
		5	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	H	P	A	F	V	N	R	D	V	F	P	I	I	A	D	R	L	T	Q	K	Q	L	F	D	K	L	H	L	P	T	A	P	W	Q	L	L	A	E	R	S	E	W	P	A	V	F	D	R	L	G	E	L	A	I	V	K	R	R	T	G	G	Y	D	G	R	G	Q	W	R	L	R	A	N	E	T	E	Q	L
Query Conservation
Alig confidence		.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	K	A	R	F	F	G	N	R	R	F	L	K	W	E	T	T	F	E	L	Q	D	K	A	L	E	G	A	G	I	P	R	V	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V	E	P	E	D	A	K	P	D	E	L	Y	F	V	R	I	E	G	S	E	L	E	E
Template Known Secondary structure		.		S			B	S		S	S	G	G	G	G	G	S												T	T			B			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B			S					S	S													S
Template Predicted Secondary structure		.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
			83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.																							.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.													.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	A	E	C	Y	G	E	C	I	V	E	Q	G	I	N	F	S	G	E	V	S	L	V	G	A	R	G	F	D	G	S	T	V	F	Y	P	L	T	H	N	L	.	.	.	.	.	.	.	.	.	.	.	.	H	Q	D	G	I	L	R	T	S	V	A	F	P	Q	A	N	A	Q	Q	Q	A	Q	A	E	E	M	L
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation				.	.	.																																																										.
Template Sequence		R	L	.	.	.	S	P	Y	R	V	E	R	F	I	P	G	V	Y	L	Y	V	H	F	F	Y	S	P	I	L	E	R	L	E	L	L	G	V	D	E	R	V	L	I	A	D	G	N	A	R	W	P	V	K	P	L	P	Y	T	I	V	G	N	.	R	A	I	A	L	R	E	S	L	L	P	Q	L	Y	D	Y	G
Template Known Secondary structure				.	.	.											S											T	T	T	T													T	T		S	S	S	S	S			S										.							G	G	G
Template Predicted Secondary structure				.	.	.																																																										.
Template SS confidence
		152	.				.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		211	.	.	.	.	.	.							.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.
Query Sequence		S	A	I	M	Q	E	L	.	.	.	.	.	.	G	Y	V	G	V	M	A	M	E	C	F	V	T	P	Q	G	L	L	I	N	E	L	A	P	R	V	H	N	S	G
Query Conservation									.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.																.
Template Conservation																														.
Template Sequence		L	A	F	V	R	T	X	R	E	L	E	P	P	G	V	I	G	P	F	A	L	H	F	A	Y	D	G	S	.	F	K	A	I	G	I	A	S	R	I	D	G	G	S
Template Known Secondary structure												S	T	T				S									S	S	S	.								S	S	B		S	G	G
Template Predicted Secondary structure																														.
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.		260	.	.	.	.	.	.	.	.	.	270	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions