Job Description P09029 Confidence 99.82% Date Thu Jan 5 11:01:47 GMT 2012 Rank 66 Aligned Residues 211 % Identity 9% Template c2p0aA_ PDB info PDB header:neuropeptide Chain: A: PDB Molecule:synapsin-3; PDBTitle: the crystal structure of human synapsin iii (syn3) in complex with2 amppnp Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.				.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure																																																														.	.	.
Query SS confidence																																																														.	.	.
Query Sequence		E	T	A	L	T	R	E	L	A	R	H	P	A	F	V	N	R	D	V	F	P	I	I	A	D	R	L	T	Q	K	Q	L	F	D	K	L	H	L	P	T	A	P	W	Q	L	L	A	E	R	S	E	W	P	A	V	F	D	R	L	G	.	.	.	E	L	A	I	V	K	R	R	T	G	G	Y	D	G	R	G	Q
Query Conservation																																																														.	.	.
Alig confidence																																																														.	.	.
Template Conservation
Template Sequence		S	L	V	I	G	L	Q	Y	G	G	L	P	A	V	N	S	L	Y	S	V	Y	N	F	C	S	K	P	W	V	F	S	Q	L	I	K	I	F	H	S	L	G	P	E	K	F	P	L	V	E	Q	T	F	F	P	N	H	K	P	M	V	T	A	P	H	F	P	V	V	V	K	L	G	H	A	H	A	G	M	G	K
Template Known Secondary structure										T	T					S								T	T																		T	T	T	S		B							S	S	S	T	T					S	S	S	S						S	S			T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.					.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.
Query SS confidence																	.	.	.	.
Query Sequence		W	R	L	R	A	N	E	T	E	Q	L	P	A	E	C	.	.	.	.	Y	G	E	C	I	V	E	Q	G	I	N	F	S	G	E	V	S	L	V	G	A	R	G	F	D	G	S	T	V	F	Y	P	L	T	H	N	L	H	Q	D	G	I	L	R	T	S	V	A	F	P	Q	A	N	A	Q	Q	Q	A	Q	A	E
Query Conservation																	.	.	.	.
Alig confidence																	.	.	.	.																																											.											.	.	.	.
Template Conservation																																																															.											.	.	.	.
Template Sequence		I	K	V	E	N	Q	L	D	F	Q	D	I	T	S	V	V	A	M	A	K	T	Y	A	T	T	E	A	F	I	D	S	K	Y	D	I	R	I	Q	K	I	G	S	N	Y	K	A	Y	M	R	T	S	I	S	G	N	W	K	A	N	T	G	.	S	A	M	L	E	Q	V	A	M	T	.	.	.	.	E	R	Y	R
Template Known Secondary structure						S															T																					T	T										S	S	S		S	S	T	T	S	S	.	S										.	.	.	.
Template Predicted Secondary structure																																																															.											.	.	.	.
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.		320	.	.	.	.	.	.	.	.	.					330	.	.	.
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		E	M	L	S	A	I	M	Q	E	L	G	Y	V	G	V	M	A	M	E	C	F	V	T	P	Q	G	.	L	L	I	N	E	L	A	P	R	V	H	N	S	G	H	W	T	Q	N	G	A	S	I	S	Q	F	E	L	H	L	R	A	I	T	D	L	P
Query Conservation																												.
Alig confidence																												.
Template Conservation
Template Sequence		L	W	V	D	S	C	S	E	M	F	G	G	L	D	I	C	A	V	K	A	V	H	S	K	D	G	R	D	Y	I	I	E	V	M	D	S	S	M	P	L	I	G	E	H	V	E	E	D	R	Q	L	M	A	D	L	V	V	S	K	M	S	Q	L	P
Template Known Secondary structure								T	T	G	G	G			S										T	T	S										T	T					G	G	G																		T
Template Predicted Secondary structure
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions