Job Description P09029 Confidence 100.00% Date Thu Jan 5 11:01:47 GMT 2012 Rank 29 Aligned Residues 343 % Identity 18% Template c2ip4A_ PDB info PDB header:ligase Chain: A: PDB Molecule:phosphoribosylamine--glycine ligase; PDBTitle: crystal structure of glycinamide ribonucleotide synthetase from2 thermus thermophilus hb8 Resolution 2.80 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.			.	.	.	.	.	.	.	30	.	.	.	.	.	.	.																			.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Query SS confidence																							.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Query Sequence		K	Q	V	C	V	L	G	N	G	Q	L	G	R	M	L	R	Q	A	G	E	P	.	.	L	G	I	A	V	W	P	V	G	L	D	A	E	P	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	V	P	F	Q	Q	S	V	I	T	A	E	I	E	R	W	P	E	T	A	L	.	.	.
Query Conservation																							.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Alig confidence																							.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Template Conservation
Template Sequence		X	K	V	L	V	V	G	S	G	G	R	E	H	A	L	L	W	K	A	A	Q	S	P	R	V	K	R	L	Y	A	A	P	G	N	A	G	X	E	A	L	A	E	L	V	P	W	N	G	D	V	E	A	L	A	D	W	A	L	A	E	G	I	D	L	T	L	V	G	P	E	A	P	L	V	E	G	I	A	D	A
Template Known Secondary structure									S	S												T		S	S											T	T	G	G	G	T	S							S													T								S	S					T	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	E	L	A	R	H	P	A	F	V	N	R	D	V	F	P	I	I	A	D	R	L	T	Q	K	Q	L	F	D	K	L	H	L	P	T	A	P	W	Q	L	L	A	E	R	S	E	W	P	A	V	F	D	R	L	G	E	L	A	I	V	K	R	R	T	G	G	Y	D	G	R	G	Q	W	R	L	R	A	N	E
Query Conservation
Alig confidence																																																																			.
Template Conservation																																																																			.
Template Sequence		F	Q	A	R	G	L	L	L	F	G	P	T	Q	K	A	A	X	I	E	G	S	K	A	F	A	K	G	L	X	E	R	Y	G	I	P	T	A	R	Y	R	V	F	R	E	P	L	E	A	L	A	Y	L	E	E	V	G	V	P	V	V	V	K	D	S	G	.	L	A	A	G	K	G	V	T	V	A	F	D	L	H
Template Known Secondary structure						T					S																						T				B							S	S													S	S						T	T	.	S		S	S	T	T					S
Template Predicted Secondary structure																																																																			.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.	.
		139	140	.	.	.	.	.	.							.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.								.	.	.	.	.	.	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.																																					.	.	.	.	.	.	.																.
Query SS confidence										.	.	.	.	.	.																																					.	.	.	.	.	.	.																.
Query Sequence		T	E	Q	L	P	A	E	C	.	.	.	.	.	.	Y	G	E	C	I	V	E	Q	G	I	N	F	S	G	E	V	S	L	V	G	A	R	G	F	D	G	S	T	V	F	Y	P	L	T	H	N	.	.	.	.	.	.	.	L	H	Q	D	G	I	L	R	T	S	V	A	F	P	Q	.	A	N	A	Q	Q	Q	A
Query Conservation										.	.	.	.	.	.																																					.	.	.	.	.	.	.																.
Alig confidence										.	.	.	.	.	.														.																							.	.	.	.	.	.	.																.
Template Conservation																													.
Template Sequence		Q	A	K	Q	A	V	A	N	I	L	N	R	A	E	G	G	E	V	V	V	E	E	Y	L	E	G	E	.	E	A	T	V	L	A	L	T	D	G	E	T	I	L	P	L	L	P	S	Q	D	H	K	R	L	L	D	G	D	Q	G	P	X	T	G	G	X	G	A	V	A	P	Y	P	X	D	E	A	T	L	R	R
Template Known Secondary structure											T	T	S	S	S												S		.									S	S	S								B								T	T	T						S		S					S
Template Predicted Secondary structure																													.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		205	.	.	.	.	210	.	.	.	.	.	.						.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.		.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.																																					.
Query SS confidence														.	.	.	.	.																																					.
Query Sequence		Q	A	E	E	M	L	S	A	I	M	Q	E	.	.	.	.	.	L	G	Y	V	G	V	M	A	M	E	C	F	V	T	P	Q	G	L	L	I	N	E	L	A	P	R	V	H	N	S	G	H	W	T	Q	N	.	G	A	S	I	S	Q	F	E	L	H	L	R	A	I	T	D	L	P	L	P	Q	P	V	V	N	N
Query Conservation														.	.	.	.	.																																					.
Alig confidence														.	.	.	.	.																																					.
Template Conservation
Template Sequence		V	E	E	E	I	L	G	P	L	V	R	G	L	R	A	E	G	V	V	Y	R	G	V	V	Y	A	G	L	X	L	T	R	E	G	P	K	V	L	E	F	N	A	R	F	G	D	P	E	A	Q	A	L	L	P	L	L	E	N	D	L	V	E	L	A	L	R	V	A	E	G	R	L	A	G	T	R	L	S	W	K
Template Known Secondary structure						T											T	T															S	S									S	S			T	T						T	T	T	B		S												T		G	G	G					B
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		279	280	.	.	.	.	.	.											.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.								.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Query Sequence		P	S	V	M	I	N	L	I	.	.	.	.	.	.	.	.	.	.	G	S	D	V	N	Y	D	W	L	K	L	P	L	V	H	L	H	W	Y	.	.	.	.	.	.	.	D	K	E	V	R	P	G	R	K	V	G	H	L	N	L	T	D	S	D	T	S	R	L	T	A	T	L	E	A	L	I	P	L	L	P	P
Query Conservation										.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	G	A	A	A	C	V	V	L	A	A	P	G	Y	P	E	S	P	R	K	G	I	P	L	H	V	P	E	P	P	E	G	V	L	V	F	H	A	G	T	R	R	E	G	G	R	L	V	S	A	G	G	R	V	L	N	V	V	G	L	G	R	D	L	K	E	A	L	E	R	A	Y	A	Y	I	P	Q	V	G	F
Template Known Secondary structure		S	S										T	T	T	T	T	S						B		B						T	T						S	S				S	S	S	S					S	S										S	S												G	G	G	S	B
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		342	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Y	A	S	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	G	A	V	Y
Template Known Secondary structure		T	T		B
Template Predicted Secondary structure
Template SS confidence
		399	400	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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