Job Description P09029 Confidence 100.00% Date Thu Jan 5 11:01:47 GMT 2012 Rank 10 Aligned Residues 348 % Identity 15% Template c2dzdB_ PDB info PDB header:ligase Chain: B: PDB Molecule:pyruvate carboxylase; PDBTitle: crystal structure of the biotin carboxylase domain of2 pyruvate carboxylase Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30			.	.	.	.	.	.	.	.	.	40	.	.	.																															.	.	.	.	.
Predicted Secondary structure																																.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	Q	V	C	V	L	G	N	G	Q	L	G	R	M	L	R	Q	A	G	E	P	L	G	I	A	V	W	P	V	.	.	G	L	D	A	E	P	A	A	V	P	F	Q	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	I	T	A
Query Conservation																																.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	R	K	V	L	V	A	N	R	G	E	I	A	I	R	V	F	R	A	C	T	E	L	G	I	R	T	V	A	I	Y	S	K	E	D	V	G	S	Y	H	R	Y	K	A	D	E	A	Y	L	V	G	E	G	K	K	P	I	E	A	Y	L	D	I	E	G	I	I	E	I	A	K	A	H	D	V	D	A	I	H	P
Template Known Secondary structure			S																					T	T									G	G	G	G	G		G	G	G	G	G	S	S						S	T	T	S						T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
						49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.			.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure		.	.	.	.																																																			.	.
Query SS confidence		.	.	.	.																																																			.	.
Query Sequence		.	.	.	.	E	I	E	R	W	P	E	T	A	L	T	R	E	L	A	R	H	P	A	F	V	N	R	D	V	F	P	I	I	A	D	R	L	T	Q	K	Q	L	F	D	K	L	H	L	P	T	A	P	W	Q	.	.	L	L	A	E	R	S	E	W	P	A	V	F	D	R	L	G	E	L	A	I	V	K	R	R
Query Conservation		.	.	.	.																																																			.	.
Alig confidence		.	.	.	.																																																			.	.
Template Conservation
Template Sequence		G	Y	G	F	L	S	E	N	I	Q	F	A	K	R	C	R	E	E	G	I	I	F	I	G	P	N	E	N	H	L	D	M	F	G	D	K	V	K	A	R	H	A	A	V	N	A	G	I	P	V	I	P	G	S	D	G	P	V	D	G	L	E	D	V	V	A	F	A	E	A	H	G	Y	P	I	I	I	K	A	A
Template Known Secondary structure			S	S	S	S	T	T											T	T				S	S										T	S										T	T	T			B			B		S	S			S	S													S							T
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.					.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.		.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.																																						.														.
Query SS confidence																										.	.	.	.																																						.														.
Query Sequence		T	G	G	Y	D	G	R	G	Q	W	R	L	R	A	N	E	T	E	Q	L	P	A	E	C	.	.	.	.	Y	G	E	C	I	V	E	Q	G	I	N	F	S	G	E	V	S	L	V	G	A	R	G	F	D	G	S	T	V	F	Y	P	L	T	H	N	L	.	H	Q	D	G	I	L	R	T	S	V	A	F	P	.
Query Conservation																										.	.	.	.																																						.														.
Alig confidence			.																							.	.	.	.																																						.														.
Template Conservation			.
Template Sequence		L	.	G	G	G	G	R	G	M	R	I	V	R	S	K	S	E	V	K	E	A	F	E	R	A	K	S	E	A	K	E	V	Y	V	E	K	L	I	E	N	P	K	H	I	E	V	Q	I	L	G	D	Y	E	G	N	I	V	H	L	Y	E	R	D	C	S	V	Q	R	R	H	Q	K	V	V	E	V	A	P	S	V
Template Known Secondary structure		T	.	T		S	S	T	T						S																										S												T	T	S															T	T								S		T
Template Predicted Secondary structure			.
Template SS confidence
		166		.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		Q	A	N	A	Q	Q	Q	A	Q	A	E	E	M	L	S	A	I	M	Q	E	L	G	Y	V	G	V	M	A	M	E	C	F	V	T	P	Q	G	L	L	I	N	E	L	A	P	R	V	H	N	S	G	H	W	T	Q	N	G	A	S	I	S	Q	F	E	L	H	L	R	A	I	T	D	L	P	L	P	Q	P	.	.
Query Conservation																																																																																.	.
Alig confidence																																																																																.	.
Template Conservation
Template Sequence		S	L	S	D	E	L	R	Q	R	I	C	E	A	A	V	Q	L	M	R	S	V	G	Y	V	N	A	G	T	V	E	F	L	V	S	G	D	E	F	Y	F	I	E	V	N	P	R	I	Q	V	E	H	T	I	T	E	M	I	T	G	I	D	I	V	Q	S	Q	I	L	I	A	D	G	C	S	L	H	S	H	E	V
Template Known Secondary structure		T																					T													T	T										S			T	T									T												T	T			T	T	S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
										275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.																	.	.	.	.	310	.			.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.
Query SS confidence		.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.
Query Sequence		.	.	.	.	.	.	.	.	V	V	N	N	P	S	V	M	I	N	L	I	G	S	D	V	N	Y	D	W	L	K	L	P	L	V	H	L	H	W	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	K	E	V	R	P	.	.	G	R	K	V	G	H	L	N	L	T	D	S	D	T	S	R	L
Query Conservation		.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.
Alig confidence		.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.
Template Conservation
Template Sequence		G	I	P	K	Q	E	D	I	R	I	N	G	Y	A	I	Q	S	R	V	T	T	E	D	P	L	N	N	F	M	P	D	T	G	K	I	M	A	Y	R	S	G	G	G	F	G	V	R	L	D	A	G	N	G	F	Q	G	A	V	I	T	P	Y	Y	D	S	L	L	V	K	L	S	T	W	A	L	T	F	E	Q	A
Template Known Secondary structure						T	T	T					S									S			T	T	T	T	T																T	T						S	S		S	T	T					S	S	S												S	S
Template Predicted Secondary structure
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
		329	330	.	.	.	.	.	.	.	.	.	340	.	.		.	.	.	.	.	.	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		T	A	T	L	E	A	L	I	P	L	L	P	P	E	.	Y	A	S	G	V	I	W
Query Conservation																.
Alig confidence																.
Template Conservation
Template Sequence		A	R	K	M	L	R	N	L	R	E	F	R	I	R	G	I	K	T	N	I	P	F
Template Known Secondary structure																S	S			S
Template Predicted Secondary structure
Template SS confidence
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions