Job Description P09029 Confidence 100.00% Date Thu Jan 5 11:01:47 GMT 2012 Rank 7 Aligned Residues 340 % Identity 24% Template c2dwcB_ PDB info PDB header:transferase Chain: B: PDB Molecule:433aa long hypothetical phosphoribosylglycinamide formyl PDBTitle: crystal structure of probable phosphoribosylglycinamide formyl2 transferase from pyrococcus horikoshii ot3 complexed with adp Resolution 1.70 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.																							.	.	.	.	.	.	50	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	Q	V	C	V	L	G	N	G	Q	L	G	R	M	L	R	Q	A	G	E	P	L	G	I	A	V	W	P	V	G	L	D	A	E	P	A	A	V	P	F	Q	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	I	T	A	E	I	E	R	W	P	E	T	A	L
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	Q	K	I	L	L	L	G	S	G	E	L	G	K	E	I	A	I	E	A	Q	R	L	G	V	E	V	V	A	V	D	R	Y	A	N	A	P	A	M	Q	V	A	H	R	S	Y	V	G	N	M	M	D	K	D	F	L	W	S	V	V	E	R	E	K	P	D	A	I	I	P	E	I	E	A	I	N	L	D	A	L
Template Known Secondary structure									S		S													T	T								S	S	T	T							S	S					S		T	T															S						S	S		S
Template Predicted Secondary structure
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		59		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.		.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure			.																											.
Query SS confidence			.																											.
Query Sequence		T	.	R	E	L	A	R	H	P	A	F	V	N	R	D	V	F	P	I	I	A	D	R	L	T	Q	K	Q	.	L	F	D	K	L	H	L	P	T	A	P	W	Q	L	L	A	E	R	S	E	W	P	A	V	F	D	R	L	G	E	L	A	I	V	K	R	R	T	G	G	Y	D	G	R	G	Q	W	R	L	R	A
Query Conservation			.																											.
Alig confidence			.																											.																																					.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.
Template Sequence		F	E	F	E	K	D	G	Y	F	V	V	P	N	A	R	A	T	W	I	A	M	H	R	E	R	L	R	E	T	L	V	K	E	A	K	V	P	T	S	R	Y	M	Y	A	T	T	L	D	E	L	Y	E	A	C	E	K	I	G	Y	P	C	H	T	K	A	.	.	.	.	.	I	M	S	G	S	Y	F	V	K	G
Template Known Secondary structure							T	T			B	S	S									T	S											T	T											S	S													S	S						.	.	.	.	.	S									S
Template Predicted Secondary structure																																																																			.	.	.	.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.						.	.	.	.	.	.	170	.	.	.
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.					.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure																																							.	.	.	.
Query SS confidence																																							.	.	.	.
Query Sequence		N	E	T	E	Q	L	P	A	E	C	Y	G	E	C	I	V	E	Q	G	I	N	F	S	G	E	V	S	L	V	G	A	R	G	F	D	G	S	.	.	.	.	T	V	F	Y	P	L	T	H	N	L	H	Q	D	G	I	L	R	T	S	V	A	F	P	Q	A	N	A	Q	Q	Q	A	Q	A	E	E	M	L	S	A
Query Conservation																																							.	.	.	.
Alig confidence										.																													.	.	.	.
Template Conservation										.
Template Sequence		P	E	D	I	P	K	A	W	.	E	E	E	K	I	I	V	E	E	H	I	D	F	D	V	E	V	T	E	L	A	V	R	H	F	D	E	N	G	E	I	V	T	T	F	P	K	P	V	G	H	Y	Q	I	D	G	D	Y	H	A	S	W	Q	P	A	E	I	S	E	K	A	E	R	E	V	Y	R	I	A	K	R
Template Known Secondary structure		G	G	G						.	T													S													T	T	S																T	T								S
Template Predicted Secondary structure										.
Template SS confidence
		178	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.			.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.									.	.	280	.	.
Predicted Secondary structure																																						.	.																														.	.	.	.	.	.	.	.
Query SS confidence																																						.	.																														.	.	.	.	.	.	.	.
Query Sequence		I	M	Q	E	L	G	Y	V	G	V	M	A	M	E	C	F	V	T	P	Q	G	L	L	I	N	E	L	A	P	R	V	H	N	S	G	H	.	.	W	T	Q	N	G	A	S	I	S	Q	F	E	L	H	L	R	A	I	T	D	L	P	L	P	Q	P	V	V	N	.	.	.	.	.	.	.	.	N	P	S	V	M
Query Conservation																																						.	.																														.	.	.	.	.	.	.	.
Alig confidence																																						.	.																														.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	T	D	V	L	G	G	L	G	I	F	G	V	E	M	F	V	K	G	D	K	V	W	A	N	E	V	S	P	R	P	H	D	T	G	M	V	T	L	A	S	H	P	P	G	F	S	E	F	A	L	H	L	R	A	V	L	G	L	P	I	P	G	E	W	V	D	G	Y	R	L	F	P	M	L	I	P	A	A	T
Template Known Secondary structure								S	S											T	T									S	S			G	G	G	G	G					S		T	T		S											T									T	T							S	S
Template Predicted Secondary structure
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
		283	.	.	.	.	.	.									290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.																			.
Query SS confidence									.	.	.	.	.	.	.	.																			.
Query Sequence		I	N	L	I	G	S	D	.	.	.	.	.	.	.	.	V	N	Y	D	W	L	K	L	P	L	V	H	L	H	W	Y	D	K	.	E	V	R	P	G	R	K	V	G	H	L	N	L	T	D	S	D	T	S	R	L	T	A	T	L	E	A	L	I	P	L	L	P	P	E	Y	A	S	G
Query Conservation									.	.	.	.	.	.	.	.																			.
Alig confidence									.	.	.	.	.	.	.	.																			.
Template Conservation
Template Sequence		H	V	I	K	A	K	V	S	G	Y	S	P	R	F	R	G	L	V	K	A	L	S	V	P	N	A	T	V	R	L	F	G	K	P	E	A	Y	V	G	R	R	L	G	I	A	L	A	W	D	K	D	V	E	V	A	K	R	K	A	E	M	V	A	H	M	I	E	L	R	T	R	S	S
Template Known Secondary structure							S	S				S										T	T	S	T	T									S				T	T											S	S														T						T	T	S
Template Predicted Secondary structure
Template SS confidence
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions