Job Description P09029 Confidence 100.00% Date Thu Jan 5 11:01:47 GMT 2012 Rank 17 Aligned Residues 337 % Identity 13% Template c1vkzA_ PDB info PDB header:ligase Chain: A: PDB Molecule:phosphoribosylamine--glycine ligase; PDBTitle: crystal structure of phosphoribosylamine--glycine ligase (tm1250) from2 thermotoga maritima at 2.30 a resolution Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.															.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	Q	V	C	V	L	G	N	G	Q	L	G	R	M	L	R	Q	A	G	E	P	L	G	I	A	V	W	P	V	G	L	D	A	E	P	A	A	V	P	F	Q	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	I	T	A	E	I	E	R	W	P	E	T	A	L	T	R	E	L	A	R	H	P	A
Query Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.	.
Template Sequence		V	R	V	H	I	L	G	S	G	G	R	E	H	A	I	G	W	A	F	A	K	Q	G	Y	E	V	H	F	Y	P	G	N	A	G	T	K	R	D	G	T	N	H	P	Y	E	G	E	K	T	L	K	A	I	P	E	E	D	I	V	I	P	G	S	E	E	.	.	.	.	.	.	F	L	V	E	R	S	N	V	F
Template Known Secondary structure										S													T	T										T	T	G	G	G	T	S							T						T	S		S	S						S	S	G	G	.	.	.	.	.	.	G	T				T	T	B	S
Template Predicted Secondary structure																																																																			.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.							.	70	.	.	.	.	.	.	.
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		F	V	N	R	D	V	F	P	I	I	A	D	R	L	T	Q	K	Q	L	F	D	K	L	H	L	P	T	A	P	W	Q	L	L	A	E	R	S	E	W	P	A	V	F	D	R	L	G	E	L	A	I	V	K	R	R	T	G	G	Y	D	G	R	G	Q	W	R	L	R	A	N	E	T	E	Q	L	P	A	E	C	.
Query Conservation																																																																																	.
Alig confidence																																																										.																							.
Template Conservation																																																										.
Template Sequence		G	P	V	K	E	V	A	R	L	E	G	S	K	V	Y	A	K	R	F	X	K	K	Y	G	I	R	T	A	R	F	E	V	A	E	T	P	E	E	L	R	E	K	I	K	K	F	S	P	P	Y	V	I	K	A	D	G	.	L	A	R	G	K	G	V	L	I	L	D	S	K	E	E	T	I	E	K	G	S	K	L
Template Known Secondary structure		S																						T	T										S	S									T	T	S		S	S						S	S	.			S	S							S	S
Template Predicted Secondary structure																																																										.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
											147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.								.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	Y	G	E	C	I	V	E	Q	G	I	N	F	S	G	E	V	S	L	V	G	A	R	G	F	D	G	S	T	V	F	Y	P	L	T	H	N	L	H	.	.	.	.	.	.	.	Q	D	G	I	L	R	T	S	V	A	F	P	Q	A	N	A	Q	Q	Q	A	Q	A	E	E	M	L
Query Conservation		.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.														.																									.	.	.	.	.	.	.
Template Conservation																								.
Template Sequence		I	I	G	E	L	I	K	G	V	K	G	P	V	V	I	D	E	F	L	A	G	N	.	E	L	S	A	X	A	V	V	N	G	R	N	F	V	I	L	P	F	V	R	D	Y	K	R	L	X	D	G	D	R	G	P	N	T	G	G	X	G	S	W	G	P	V	E	I	P	S	D	T	I	K	K	I	E	E	L	F
Template Known Secondary structure				T	S	S	S	T	T			S										S		.										T	T																T	T	T						S		S
Template Predicted Secondary structure																								.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.		.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		211	.	.	.	.	.	.						.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure									.	.	.	.	.																																	.
Query SS confidence									.	.	.	.	.																																	.
Query Sequence		S	A	I	M	Q	E	L	.	.	.	.	.	G	Y	V	G	V	M	A	M	E	C	F	V	T	P	Q	G	L	L	I	N	E	L	A	P	R	V	H	N	S	G	H	W	.	T	Q	N	G	A	S	I	S	Q	F	E	L	H	L	R	A	I	T	D	L	P	L	P	Q	P	V	V	N	N	P	S	V	M	I	N
Query Conservation									.	.	.	.	.																																	.
Alig confidence									.	.	.	.	.																																	.
Template Conservation
Template Sequence		D	K	T	L	W	G	V	E	K	E	G	Y	A	Y	R	G	F	L	Y	L	G	L	X	L	H	D	G	D	P	Y	I	L	E	Y	N	V	R	L	G	D	P	E	T	E	V	I	V	T	L	N	P	E	G	F	V	N	A	V	L	E	G	Y	R	G	G	K	X	E	P	V	E	P	R	G	F	A	V	D	V	V
Template Known Secondary structure											T	T															T	T									S	S			T	T																							T	S									S
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		285	.	.	.							.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.							.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.																		.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.																		.	.	.	.	.	.
Query Sequence		L	I	G	S	.	.	.	.	.	.	D	V	N	Y	D	W	L	K	L	P	L	V	H	L	H	W	Y	.	.	.	.	.	.	D	K	E	V	R	P	G	R	K	V	G	H	L	N	L	T	D	S	D	T	S	R	L	T	A	T	L	E	A	L	I	P	L	L	P	P	E	Y	A	S	G
Query Conservation						.	.	.	.	.	.																		.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.																		.	.	.	.	.	.
Template Conservation
Template Sequence		L	A	A	R	G	Y	P	D	A	P	E	K	G	K	E	I	T	L	P	E	E	G	L	I	F	F	A	G	V	A	E	K	D	G	K	L	V	T	N	G	G	R	V	L	H	C	X	G	T	G	E	T	K	E	E	A	R	R	K	A	Y	E	L	A	E	K	V	H	F	E	G	K	T	Y
Template Known Secondary structure					T	T	T	T	T	S						B		B			S	S						S	S					T	T						S	S										S	S																B		T	T		B
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions