Job Description P09029 Confidence 99.82% Date Thu Jan 5 11:01:47 GMT 2012 Rank 67 Aligned Residues 192 % Identity 10% Template c1i7nA_ PDB info PDB header:neuropeptide Chain: A: PDB Molecule:synapsin ii; PDBTitle: crystal structure analysis of the c domain of synapsin ii2 from rat brain Resolution 1.90 Å

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		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.				.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.
Query SS confidence																																																									.	.	.
Query Sequence		E	I	E	R	W	P	E	T	A	L	T	R	E	L	A	R	H	P	A	F	V	N	R	D	V	F	P	I	I	A	D	R	L	T	Q	K	Q	L	F	D	K	L	H	L	P	T	A	P	W	Q	L	L	A	E	R	.	.	.	S	E	W	P	A	V	F	D	R	L	G	E	L	A	I	V	K	R	R	T	G	G
Query Conservation																																																									.	.	.
Alig confidence																																																									.	.	.
Template Conservation
Template Sequence		E	N	E	D	F	R	H	L	V	I	G	M	Q	Y	A	G	L	P	S	I	N	S	L	E	S	I	Y	N	F	C	D	K	P	W	V	F	A	Q	M	V	A	I	F	K	T	L	G	G	E	K	F	P	L	I	E	Q	T	Y	Y	P	N	H	R	E	M	L	T	L	P	T	F	P	V	V	V	K	I	G	H	A
Template Known Secondary structure		T	T													T	T					S								T	S	S																	T	T	T	S		B							S	S	G	G	G	G	S	S				S	S						S	S
Template Predicted Secondary structure
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.					.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure																							.	.	.	.
Query SS confidence																							.	.	.	.
Query Sequence		Y	D	G	R	G	Q	W	R	L	R	A	N	E	T	E	Q	L	P	A	E	C	.	.	.	.	Y	G	E	C	I	V	E	Q	G	I	N	F	S	G	E	V	S	L	V	G	A	R	G	F	D	G	S	T	V	F	Y	P	L	T	H	N	L	H	Q	D	G	I	L	R	T	S	V	A	F	P	Q	A	N	A	Q
Query Conservation																							.	.	.	.
Alig confidence																							.	.	.	.																																																				.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		H	S	G	M	G	K	V	K	V	E	N	H	Y	D	F	Q	D	I	A	S	V	V	A	L	T	Q	T	Y	A	T	A	E	P	F	I	D	A	K	Y	D	I	R	V	Q	K	I	G	N	N	Y	K	A	Y	M	R	T	S	I	S	G	N	W	K	T	N	T	G	S	A	M	L	E	Q	I	A	M	.	.	.	.
Template Known Secondary structure		S	T	T	T	T						S															T																					T	T									S	S		T	T	T	S		S				S	S							.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure																																		.
Query SS confidence																																		.
Query Sequence		Q	Q	A	Q	A	E	E	M	L	S	A	I	M	Q	E	L	G	Y	V	G	V	M	A	M	E	C	F	V	T	P	Q	G	.	L	L	I	N	E	L	A	P	R	V	H	N
Query Conservation																																		.
Alig confidence		.																																.
Template Conservation		.
Template Sequence		.	S	D	R	Y	K	L	W	V	D	A	C	S	E	M	F	G	G	L	D	I	C	A	V	K	A	V	H	G	K	D	G	K	D	Y	I	F	E	V	M	D	C	S	M	P
Template Known Secondary structure		.												T	T	G	G	G			S										T	T	S										T	T
Template Predicted Secondary structure		.
Template SS confidence
			351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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