Job Description P09029 Confidence 100.00% Date Thu Jan 5 11:01:47 GMT 2012 Rank 36 Aligned Residues 261 % Identity 13% Template c1e4eB_ PDB info PDB header:ligase Chain: B: PDB Molecule:vancomycin/teicoplanin a-type resistance protein vana; PDBTitle: d-alanyl-d-lacate ligase Resolution 2.5 Å

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		2	.	.	.	.	.	.	.	10	.										.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	Q	V	C	V	L	G	N	G	Q	.	.	.	.	.	.	.	.	.	L	G	R	M	L	R	Q	A	G	E	P	L	G	I	A	V	W	P	V	G	L	D	A	E	P	A	A	V	P	F	Q	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation												.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	K	V	A	I	L	F	G	G	C	S	E	E	H	D	V	S	V	K	S	A	I	E	I	A	A	N	I	N	K	E	K	Y	E	P	L	Y	I	G	I	T	K	S	G	V	W	K	M	C	E	K	P	C	A	E	W	E	N	E	N	C	Y	S	A	V	L	S	P	D	K	K	M	H	G	L	L	V	K	K	N
Template Known Secondary structure											S	S	T	T													T	T	S		T	T	T										T	T	S						S	S		S	T	T				T	T										T	T	T							S	S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
										44	.	.	.	.	.	50	.						.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure		.	.	.	.	.	.	.	.									.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.									.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	S	V	I	T	A	E	I	E	.	.	.	.	.	R	W	P	E	T	A	L	T	R	E	L	A	R	H	P	A	F	V	N	R	D	V	F	P	I	I	A	D	R	L	T	Q	K	Q	L	F	D	K	L	H	L	P	T	A	P	W	Q	L	L	A	E	R	S	E	W	P	A	V	F
Query Conservation		.	.	.	.	.	.	.	.									.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.									.	.	.	.	.																																																								.	.	.
Template Conservation																																																																														.	.	.
Template Sequence		H	E	Y	E	I	N	H	V	D	V	A	F	S	A	L	H	G	K	S	G	E	D	G	S	I	Q	G	L	F	E	L	S	G	I	P	F	V	G	C	D	I	Q	S	S	A	I	C	M	D	K	S	L	T	Y	I	V	A	K	N	A	G	I	A	T	P	A	F	W	V	I	N	K	D	D	R	P	.	.	.	V
Template Known Secondary structure		S	S							S								S	T	T	T	T	S	S										T			B	S	S											S											T	T											S	S				.	.	.
Template Predicted Secondary structure																																																																														.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.				160
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.					.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.
Query SS confidence																																			.	.	.	.
Query Sequence		D	R	L	G	E	L	A	I	V	K	R	R	T	G	G	Y	D	G	R	G	Q	W	R	L	R	A	N	E	T	E	Q	L	P	.	.	.	.	A	E	C	Y	G	E	C	I	V	E	Q	G	I	N	F	S	G	E	V	S	L	V	G	A	R	G	F	D	G	S	T	V	F	Y	P	L	T	H	N	L	H	Q	D
Query Conservation																																			.	.	.	.
Alig confidence																																			.	.	.	.															.													.
Template Conservation																																																					.													.
Template Sequence		A	A	T	F	T	Y	P	V	F	V	K	P	A	R	S	G	S	S	F	G	V	K	K	V	N	S	A	D	E	L	D	Y	A	I	E	S	A	R	Q	Y	D	S	K	I	L	I	E	Q	A	V	S	.	G	C	E	V	G	C	A	V	L	G	N	S	.	A	A	L	V	V	G	E	V	D	Q	I	R	L	Q	Y
Template Known Secondary structure		G	G	G	S		S	S						S	S			T	T	T	T						S	G	G	G									T	T	T		S	S									.	S											T	.	T													S	S
Template Predicted Secondary structure																																																					.													.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.		.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		187	.	.															190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.
Query Sequence		G	I	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	T	S	V	A	F	P	Q	A	N	A	Q	Q	Q	A	Q	A	E	E	M	L	S	A	I	M	Q	E	L	G	Y	V	G	V	M	A	M	E	C	F	V	T	P	Q	G	.	L	L	I	N	E	L	A	P	R	V	H	N	S	G	H	W	T	Q
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.
Template Conservation
Template Sequence		G	I	F	R	I	H	Q	E	V	E	P	E	K	G	S	E	N	A	V	I	T	V	P	A	D	L	S	A	E	E	R	G	R	I	Q	E	T	V	K	K	I	Y	K	T	L	G	C	R	G	L	A	R	V	D	M	F	L	Q	D	R	G	R	I	V	L	N	E	V	N	T	L	P	G	F	T	S	Y	S	R	Y
Template Known Secondary structure		S				G	G	G	S	S	S	G	G	G			S	S					S	S		S	S																			T	T													T	T										S	S				S	T	T
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
						252	.	.	.	.	.	.	.	260	.				.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.											.	.	.
Query SS confidence		.	.	.	.											.	.	.
Query Sequence		.	.	.	.	N	G	A	S	I	S	Q	F	E	L	.	.	.	H	L	R	A	I	T
Query Conservation		.	.	.	.											.	.	.
Alig confidence		.	.	.	.											.	.	.
Template Conservation
Template Sequence		P	R	M	M	A	A	A	G	I	S	L	P	E	L	I	D	R	L	I	V	L	A	L
Template Known Secondary structure								T	T
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions